Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq131719 165 5e-36 seq67196 116 2e-21 seq15021 104 2e-17 seq131720 102 5e-17 seq193007 98.7 6e-16 >seq131719 Length=2163 Score = 165 bits (182), Expect = 5e-36 Identities = 337/497 (68%), Gaps = 8/497 (2%) Strand=Plus/Minus Query 6044 GGATTAGCACCCTTTCCACCCGGAAACTCCCAGTCAATGTCCACTCCGTCAAAGAACTTC 6103 || ||||| || || || || || |||||||| || || || || ||||||||||| ||| Sbjct 2047 GGGTTAGCGCCTTTACCTCCAGGGAACTCCCAATCGATATCGACGCCGTCAAAGAATTTC 1988 Query 6104 CATGTCTCCAGAAACTCGCGGACACTTGTGACGAACACCTTACGTTTGGAGTCATCGTTC 6163 || |||| || || || || | ||||| | ||| || | | || | Sbjct 1987 CAGGTCTGGAGGAAGTCTTTTACGGAAGCAACGAAACGGTCACGCTTTGTCTTGTCAGTG 1928 Query 6164 ATAAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACTGTCAACGAA 6223 | ||| | || ||||| ||| ||||| || || | ||| || | | | | | | Sbjct 1927 AAGAAAAAGAATGGATCAGCCAAAGTCCAGCCGCCGACGGAAGGCAAAA-TCTTGAGGTC 1869 Query 6224 GGGTTGTGAC-GTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACGCTTCGTTGTA 6282 ||| | | |||| | |||||| ||||| ||||| || ||||| | |||||| | Sbjct 1868 TGGTCTCGCCTGTTTCAACATCATCAGTTGGCCGAAGTTTCCTTTGTAAGGTTCGTTCCA 1809 Query 6283 CGCCTCAACGCCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTT 6342 | || ||| || |||||||| || | ||||||||| ||| ||||| ||| || Sbjct 1808 TGAAGAAAGGCCCTTTTGTGGTTTCTGAAGAGCGGCCCAGGGGTCATGAATGGACACTTT 1749 Query 6343 GAAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAGGAATTGGG---AATCTG 6399 |||||| ||||| || |||||| ||| || |||| || | || ||||| Sbjct 1748 GAAGTCTTCGCGGCCGCTGCAGGAACGCTGGAGTGCCTGGAA---ACTGCCCTCAATCTC 1692 Query 6400 CTTGAGGGCGTCGTTTATGCCGTTACCACCACAAATTGGAATGAACCCGTACAGCAGGTG 6459 ||| || |||||| ||||||| || || || || |||||||||||||||| || ||| Sbjct 1691 CTTCAGACTGTCGTTGATGCCGTCGCCTCCGCAGATCGGAATGAACCCGTACAACAAGTG 1632 Query 6460 CGTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTC 6519 |||||||| || || || || ||| | ||| |||| || |||||||||||| || Sbjct 1631 AGTCAGATTGGGGATCGGCACGCGGTCCACGGGGAACTTCCTCGGATACACTCCCCATTC 1572 Query 6520 CACGAAATACGCACCGA 6536 ||||| || || |||| Sbjct 1571 TACGAAGTAAGCTCCGA 1555 >seq67196 Length=1848 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||||| |||| ||| |||||| || || |||||||| || ||| | || |||| Sbjct 254 CAAAACCAGATGAAGGGTGGATTCTTTTTGGATATTATAGTCAGATAGGGTGCGGCCATC 313 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||||||||| ||||| || || ||||| || ||| |||| | || ||||| || Sbjct 314 TTCAAGCTGTTTTCCAGCAAAGATCAGACGTTGTTGATCTGGCGGAATACCTTCCTTATC 373 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| |||||| | | || | ||| | |||||| || | || || || Sbjct 374 CTGAATCTTGGCTTTGACATTTTCAATGGTGTCAGATGGCTCAACTTCTAGAGTGATAGT 433 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || || | || || ||||||||||||||| Sbjct 434 TTTACCAGTCAAGGTTTTAACAAAGATCTGCATA 467 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| || ||||| || ||| | || |||| || || ||||| || ||||| Sbjct 503 TTCTTTCTGAATATTGTAGTCAGATAGGGTACGCCCATCTTCAAGTTGTTTGCCAGCAAA 562 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | ||| ||||| || ||| || || ||| Sbjct 563 AATCATTCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCTTGAATTTTAGCCTTAACGTT 622 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | |||||| || | || || ||||| || || || || || || Sbjct 623 TTCAATTGTGTCCGATGGCTCAACTTCAAGTGTAATAGTTTTGCCAGTAAGGGTTTTAAC 682 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 683 AAAGATCTGCATA 695 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| || ||||| || ||| | || |||| || || ||||| || || || Sbjct 47 TTCTTTCTGAATATTGTAGTCAGATAGGGTGCGCCCATCTTCAAGTTGTTTGCCAGCGAA 106 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| ||||||||| | || | ||||||||| || |||||| ||| || | Sbjct 107 AATCAGTCTCTGCTGGTCTGGGGGGATCCCCTCCTTATCTTGAATCTTGGCTTTTAC--A 164 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | ||| || || | || || ||||| || || | || || Sbjct 165 TTCTCAATAGTGTCTGATGGCTCTACCTCTAGAGTAATAGTTTTACCAGTCAAGGTTTTA 224 Query 34968 ACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 225 ACAAAGATCTGCATA 239 >seq15021 Length=1916 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 34747 AATCATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTAT 34806 ||| ||| ||||| || | ||| || |||||||||| || |||||||||||| || | Sbjct 962 AATAATTACCTCCTCTGAGCCTTAACACCAAGTGAAGAGTAGATTCTTTCTGAATATTGT 903 Query 34807 AGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGT 34866 | || ||||| | || | || |||| ||||| || ||||| || | |||||| || | Sbjct 902 AATCAGAAAGTGTGCGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGTTGAT 843 Query 34867 CTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGG 34926 | | || | ||||| || || |||||| ||| || | |||| | || | Sbjct 842 CAGGAGGAATACCCTCTTTATCTTGAATCTTGGCTTTCACATTTTCTATAGTGTCGGAAG 783 Query 34927 CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || | ||| ||||| || ||||| || || || || || |||||||| Sbjct 782 CCTCCACCTCTAGGGTGATGGTCTTCCCCGTTAGGGTTTTTACGAATATCTGCAT 728 >seq131720 Length=1042 Score = 102 bits (112), Expect = 5e-17 Identities = 184/261 (70%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 5655 CGTGCACTCCGGACCACCCACGACCGTACATGGCTACACCCACAATTAGCTTCTTCG-AT 5713 |||| || |||| ||| ||||| ||||||||||| ||||| || | | |||||| | || Sbjct 368 CGTGGACACCGGTCCAGCCACGTCCGTACATGGCAACACCAACCACAATCTTCTTAGGAT 309 Query 5714 TCGACGCTCTGATTTAACAGACGCTTGATTGAAAAATCTGTCGTGTATGTCTCGCCTGGG 5773 || || | || |||| || | ||||| |||||||| ||||| || Sbjct 308 TC-ACACCTTGCGCCAACAAGTATTTCACGCCGAAATCAGTCGTGTAAGTCTCCTTCGGC 250 Query 5774 TTCCACGATGGAGCGTACAGAGGTGTCTGGTGTCCCAGA--TCCGTTAACGACCAGGCAC 5831 | ||| |||||||||||||||| | |||||| || ||| | || ||||| || | Sbjct 249 TGCCAAGATGGAGCGTACAGAGAAGCCTGGTGACCAAGAGTATCATT--GGACCACGCTC 192 Query 5832 CCTTGTAGTCGTACGTCATAACAAAGATGTGATCAAGATACCTTTGTGCGCTG-GC-GTA 5889 ||||| | ||||| |||| | || ||||| || | || ||| ||||||| || ||| Sbjct 191 CCTTGAAATCGTAGCTCATGAAGAATATGTGGTCCATGTA--TTTCTGCGCTGCGCTGTA 134 Query 5890 GTCGACAACGTCGATCTTGTC 5910 ||||| || | ||||||||| Sbjct 133 ATCGACGACTTGGATCTTGTC 113 >seq193007 Length=659 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| ||||||||| || || ||||| || || | ||| |||| || Sbjct 421 AACCAAGTGCAATGTAGATTCTTTCTGGATATTGTAGTCGGATAGTGTGCGTCCATCTTC 480 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||||| ||||| || || || || |||||| | || | || || ||||| Sbjct 481 AAGTTGTTTTCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATACCTTCTTTGTCTTG 540 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCG--GCCTCAACATCGACGGTTATGGTT 34949 ||| || |||||| || || | | ||| | ||||| || | || || ||| Sbjct 541 AATTTTGGCTTTGAC--ATTCTCAATAGTGTCCGATGGTTCAACTTCTAAAGTGATAGTT 598 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||| |||||||||||||| Sbjct 599 TTGCCAGTAAGTGTCTTGACAAAGATCTGCAT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323656102158264