Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq168888 462 2e-125 seq105002 95.1 1e-14 >seq168888 Length=4095 Score = 462 bits (512), Expect = 2e-125 Identities = 1177/1792 (66%), Gaps = 40/1792 (2%) Strand=Plus/Minus Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || ||||||| || | |||| |||| ||||||| ||||||||||| || Sbjct 3214 TTTATCAACTGTAAACTGTATAGCATTAGCAGCTGGCTTTGTTCTCAAATAATACATGCC 3155 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || || | ||| | |||| |||| || || || ||||||||| ||| | || Sbjct 3154 GGTTTTAAGACCCATTTTCCAAGCATAAAAGTGAATCGATGTTAATTTACCGTAATTTGG 3095 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | |||||| |||| ||| ||||| || |||||||||||||| ||||| || || Sbjct 3094 TTCAGCTACATGAATGTTAAAAGACTGACTTTGGTCAATAAATGCACCCCTATCGGCAGC 3035 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | | || | | | |||||| || || ||||| | | | | || || Sbjct 3034 CATTTGAATTGTAGTTTTAACAGACACCTCCCAAACAGTCTTATATAGATCTCTTATTTC 2975 Query 47213 TTCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 || || | | | ||||||| || || || || | ||| || ||||| | Sbjct 2974 TTTCGGAATAGCTTCTATATTTTGTATTGACCCATTATTGTGTATTATAAGATTTTTCAT 2915 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 || | ||| | | | ||||||||| || | |||| |||| |||| ||| Sbjct 2914 GTCTTCATCCCACAAATCTGCTTCAGTTAAATCACGCAATAAATGATGATTTACAACTTG 2855 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 || || ||||| | ||||| | |||||||| ||| | ||||| | ||||| Sbjct 2854 GAACTCGCCAGACAAAACTCTTCTTTGGTATATATTTGATGTGAAAGGTTCAAATGATTC 2795 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 ||| || |||| ||||||||| || |||||||| ||||| | || | |||||| ||| Sbjct 2794 ATTGTTACCAAGAATTTGAGCCGTGGATGCTGTTGGCATAGGAGCTAATAATAAAGAATT 2735 Query 47450 TCTTACTCCATATTT-----TTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCT 47504 ||| | |||| || || | ||| | ||| | |||||| || Sbjct 2734 TCTCAAACCATGCTTAGAAATTCTTTCTTTTAAAGCA-----TCCCAGTTCCAAAGGTCG 2680 Query 47505 GATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTA 47564 | || |||| | || ||||| | || |||| ||| || || | Sbjct 2679 GTGGGGGTTTTGCTCCACATGTCGTATTGTAATATACCTTGACTGGATGGGCTTCCTTCG 2620 Query 47565 TATGTTTTATAAGGACCGTATAGTTTA--GCGAGTTCACAACTTGCTTCCAATGCACTAT 47622 || || | |||| ||| ||| ||| || ||||||||||| ||||| | ||| | | Sbjct 2619 TAAGTGTCATAA--ACCCCATACTTTTCTGCAAGTTCACAACTAGCTTCTAGTGCCCCGT 2562 Query 47623 AATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGA--TTCAAAAGG 47680 |||| || ||||||||||||| | || || ||| | ||| | || | |||| | | Sbjct 2561 AATAAATGGTTTCAAATATTTGTTGATTAAGTTTCATCGCTGC--ATCACTTTCATATGC 2504 Query 47681 ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATG 47740 | ||||||||||| | |||||||||||||| || || || ||||| Sbjct 2503 AATGCGCATCAAGACAAATGTATCTGCTAGCCCTTGAACACCAATTCCTATAGGCCTATG 2444 Query 47741 AGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATT 47800 | |||| || || || || | ||||| || | ||| || |||||||| Sbjct 2443 CCTCATATTTGATTTTCTTGCCTCCGGGATCGGATAGAAATTAACATCAATGATTTTATT 2384 Query 47801 TAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT 47860 || | |||| ||||||||||||||| | | | |||| Sbjct 2383 TAAGTTTTGAGTAATAATTTTGGTGACTTCTTTTAATTTATTAAAATTATATGTTTTATC 2324 Query 47861 TA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGG 47917 | |||||||| | || | || |||||||||| |||||| || || || || | | Sbjct 2323 TTCATTAACAAACATGTTCAAAGCAATAGATGCTAAATTACACACCGCGACTTCGTCAGC 2264 Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 || |||| | || |||| |||| |||| |||||| ||||| || || || | Sbjct 2263 TGACGTGTATTCAACGATCTCAGTGCATAAGTTACTACATTTTATAGTGCCTAAGTTCTT 2204 Query 47978 ATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTAT 48037 || ||| | ||||||| ||||| |||||||||||| | |||||||| ||||| | Sbjct 2203 TTGGTTACTTTTCCTGTTACAAGCGTCTTTGTAAAGCATATAGGGTGTTCCCGTTTCAAC 2144 Query 48038 CTGAGATTCAATGATAGATTTCC---AAAC---AGTCCTAGCCTTTATAACAGCTCTAGC 48091 || | ||| || || | ||||| |||| | || ||| | | ||| | || Sbjct 2143 TTGGGCTTCGATTATGGCTTTCCATAAAACTTGGGCGCTGACCTGTTTCACAAAAC--GC 2086 Query 48092 TTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTAT 48150 ||| || | |||||||| ||||| || || |||||||| ||| ||| | | Sbjct 2085 TTT----TCTTTTTCGTATTGTTCATATAGATTTTCGAATTCATCTCCCCAACA-GTCAG 2031 Query 48151 CTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAG 48210 |||| |||||||| |||| ||||||||| | ||| || |||| |||| ||||| Sbjct 2030 CTAATCCAGGACAATCATGAGGACACATAAGACTCCAGTCTTCATTTTTTTCAACTCTTT 1971 Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 ||||||| | ||| |||||||| | ||| ||| || || | || || || |||||| | Sbjct 1970 TCATAAAAAGATCCGGTATCCATAAAGCATAAAACAACTCTCGAGCTCGTACTTCTTCTT 1911 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 ||||| | ||| |||| || || ||||| || | || || |||||||| || ||||||| Sbjct 1910 TGCCAGTGTTCTTTTTGAGGTCGAGAAATTCAAAAATGTCTGCATGCCAAGGCTCTAAAT 1851 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | | ||| | | || || |||||||| || |||||||||| |||||| || || |||| Sbjct 1850 ACACTGCAAAAGCTCCGGGGCGTTTATTTCCACCTTGATCTACATATCTTGCTGTGTTGT 1791 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | ||||| || | |||||| || | || || |||| |||||| || || | ||||| Sbjct 1790 TGTAAACCCTAAGCATTGGCACGAGTCCGTTAGATACACCATTTGTGCCTGCGATATATG 1731 Query 48451 TTCCACTAGCTCTTATATTACTAA-TTGAAATACCTATACCACCTGCCATTTTAGATATT 48509 ||| ||||||| ||| || || | | || || ||||| || ||||||||| Sbjct 1730 ATCCTTTAGCTCTGATACAGTGAACGTGGACT-CCGATTCCACCAGCAGATTTAGATATA 1672 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 || ||||| |||| | |||||||| || ||||| ||||| |||||| ||||| || Sbjct 1671 AGCGCACATTGTTTTAAAGTATCATATATACCTTCAATACTGTCATCTTTCATAGCTACA 1612 Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629 ||||||||| |||| ||| || | || | | || | ||||| || Sbjct 1611 AGAAAACAAGATGACAATTGTGGCCGTGGTGTGGCAGCTGAGAACAGGGTTGGGCTGGCG 1552 Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCAT 48689 || |||| |||| || || | ||| || || || | || ||| ||||||||| Sbjct 1551 TGTGTAAAATATTTTTCAGACAGCAAATTGTAAGTATTTATGGCAGCATCTATATCTTCA 1492 Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 ||| ||||| |||||||| | ||| | ||||| || |||| |||| ||| Sbjct 1491 CCATGGATACCAATAGATACTCTCATCAGCATATGCTGTGGTCGTTCAGCAA 1440 >seq105002 Length=4868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 48933 GTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGA 48992 |||||||| || || || ||||||| || || ||||||||| | |||||| || |||||| Sbjct 3803 GTTTCTTTGTGTAGGTTGGATATAGCTAGTCGAGCAGCTAACACAGCATAGTCAGGATGA 3744 Query 48993 ATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTAC 49051 | || || ||| || | ||||||||||||| |||||||||| ||| ||||| Sbjct 3743 TTAGTAGT-CATAGTTGCCGCGGTTTCTGCTGCTAAATTATCTAATTCAACAGTTGTTAC 3685 Query 49052 ACCTGTATATATTCCTTGAATAACTTTCATTGCTAT 49087 ||| | || || || | |||||||| | || ||| Sbjct 3684 ACCAGAGTAAATCCCATTTATAACTTTTAATGTTAT 3649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560372846419320