Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq131719 138 9e-28 seq67196 134 1e-26 seq15021 131 1e-25 seq174000 87.8 1e-12 >seq131719 Length=2163 Score = 138 bits (152), Expect = 9e-28 Identities = 331/495 (67%), Gaps = 12/495 (2%) Strand=Plus/Plus Query 27710 GCTTACTTTGTCGAGTGGGGTGTGTATGGTAGACAGTATCCGGCCAACAAACTACCCATA 27769 |||||||| || || ||||| |||||| || ||| || | || | || || Sbjct 1560 GCTTACTTCGTAGAATGGGGAGTGTATCCGAGGAAGTTCCCCGTGGACCGCGTGCCGATC 1619 Query 27770 CCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGCGGAGACGGTATCAAC 27829 || |||||||| || ||| ||||||| || | || || ||||| || ||||| |||||| Sbjct 1620 CCCAATCTGACTCACTTGTTGTACGGGTTCATTCCGATCTGCGGAGGCGACGGCATCAAC 1679 Query 27830 GATAGCCTAAAACAGATCCCCAATTCTTTTGAGGTCCTCCAAAAGTCATGCTCAAACCGA 27889 || || || || |||| ||| ||| ||||| || ||| ||| Sbjct 1680 GACAGTCTGAAGGAGATTGAGGGCAGTTTCCAGGCACTCCAGCGTTCCTGCAGCGGCCGC 1739 Query 27890 GCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGCAAAAACCGCAAAAGGGT 27949 | ||||| | ||| ||| || || |||| ||| || || ||||| |||||||| Sbjct 1740 GAAGACTTCAAAGTGTCCATTCATGACCCCTGGGCCGCTCTTCAGAAACCACAAAAGGGC 1799 Query 27950 GTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGTTGATGGCCATCAAAC-- 28007 | | |||||||| || ||||| || ||||| ||||| ||||| | |||| Sbjct 1800 CTTTCTTCATGGAACGAACCTTACAAAGGAAACTTCGGCCAACTGATGATGTTGAAACAG 1859 Query 28008 --GACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGACTCTGAGCGATCC 28065 || |||| |||| || |||| || | || || |||||| || ||||| Sbjct 1860 GCGAGACCAG----ACCTCAAGATTTTGCCTTCCGTCGGCGGCTGGACTTTGGCTGATCC 1915 Query 28066 ATTCTTTTTTATGCAC-GACCCGGCCAAGCGTG-CCGTGTTTGTAGAGTCTGTGCGCGAA 28123 ||||||||| | ||| ||| | | ||||||| |||| || || | || || || Sbjct 1916 ATTCTTTTTCTT-CACTGACAAGACAAAGCGTGACCGT-TTCGTTGCTTCCGTAAAAGAC 1973 Query 28124 TTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGTTTCCGGGTGGA 28183 || || || || ||||| ||||||||||| |||||| | || |||||||| || || || Sbjct 1974 TTCCTCCAGACCTGGAAATTCTTTGACGGCGTCGATATCGATTGGGAGTTCCCTGGAGGT 2033 Query 28184 AAGGGAGCCAACCCC 28198 || || || |||||| Sbjct 2034 AAAGGCGCTAACCCC 2048 >seq67196 Length=1848 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||||| ||| |||||||||||||||||||| || | | | || |||| |||||||| Sbjct 719 ATGTAAAGTGGATTCTTTTTGAATATTGTAATCTGACAAAGTACGGCCGTCTTCCAACTG 778 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| ||||| ||||| ||||| | ||| | || || ||||| |||||| Sbjct 779 CTTTCCAGCAAAAATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTGTCCTGAATCTT 838 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| || | | || ||||| | || || |||| || ||||||||||| || Sbjct 839 AGCTTTAACGTTCTCGATAGTATCTGAAGGTTCGACTTCCAAGGTGATCGTTTTTCCAGT 898 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||| || ||||||||||| Sbjct 899 CAAAGTTTTCACGAAAATCTGCAT 922 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||| |||||||| | || | || || | || || || || || Sbjct 48 TCTTTCTGAATATTGTAGTCAGATAGGGTGCGCCCATCTTCAAGTTGTTTGCCAGCGAAA 107 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| ||| || || | ||| | |||||||| || |||||| ||||||| Sbjct 108 ATCAGTCTCTGCTGGTCTGGGGGGATCCCCTCCTTATCTTGAATCTTGGCTTTTACATTC 167 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| | ||| ||||| | ||||| ||||| || ||||| ||||| ||| Sbjct 168 TCAATAGTGTCTGATGGCTCTACCTCTAGAGTAATAGTTTTACCAGTCAAGGTTTTAACA 227 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 228 AAGATCTGCAT 238 >seq15021 Length=1916 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| |||||||| || || || ||||| ||||||||||||||||| Sbjct 954 CCTCCTCTGAGCCTTAACACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCAGAA 895 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| ||||| || ||||| ||||| |||| ||| |||||||| | ||| Sbjct 894 AGTGTGCGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGTTGATCAGGAGGA 835 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| || || |||||| ||| ||| | | || || || ||||||||| Sbjct 834 ATACCCTCTTTATCTTGAATCTTGGCTTTCACATTTTCTATAGTGTCGGAAGCCTCCACC 775 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || | || || || || ||||| | |||||||| || |||||||| || Sbjct 774 TCTAGGGTGATGGTCTTCCCCGTTAGGGTTTTTACGAATATCTGCATTGT 725 >seq174000 Length=6590 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 7867 CAGAAACCAAAGCAGCTTGCCGAAGCTGGATTATACTACACGGGCCGCGGTGATATGACA 7926 |||||||| | | | ||||| || || || | || || || | ||||| | ||| Sbjct 3099 CAGAAACCGGAAGATTTAGCCGAGGCCGGCTTCTTTTATACAGGACAAGGTGACAAGACC 3040 Query 7927 AAGTGTTTCTACTGTGACGGGGGTCTCAAAGATTGGGAGGAAAACGAT---ATACCGTGG 7983 || || || || |||||||| ||||| ||||||||||| ||||||| ||||||||| Sbjct 3039 AAATGCTTTTATTGTGACGGCGGTCTTAAAGATTGGGA---AAACGATGACATACCGTGG 2983 Query 7984 GAGCAACACGCGCGCTGGTTTGATAAATGCGCATATGTCAAACTAGTCAAAGGGGAGGAA 8043 || ||||||| || ||||| | ||| || ||| || | || || || || | || Sbjct 2982 GAAGAACACGCACGATGGTTCAGTCGATGTGCCTATCTCCAGCTTGTAAAGGGTAAAGAT 2923 Query 8044 TATGTTCAGAAGGTAATTACTGAAGCGTGC 8073 || || || | || | || ||||| ||| Sbjct 2922 TACGTCCAAAGAGTTAACACAGAAGCCTGC 2893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379790566292349