Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq15021 163 6e-35 seq67196 158 2e-33 seq193007 136 8e-27 >seq15021 Length=1916 Score = 163 bits (180), Expect = 6e-35 Identities = 181/240 (75%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 192302 TAATAAT-ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTA 192360 ||||||| ||| ||||| || | ||| || || || | ||||| ||||| ||||| Sbjct 963 TAATAATTACCTCCTCTGAGCCTTAACACCAAGTGAAGAGTAGATTCTTTCTGAATATTG 904 Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 |||||||| | ||| || | || ||||||||||||||||||||||| |||| |||||| Sbjct 903 TAATCAGAAAGTGTGCGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGTTGA 844 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 ||||| || || || ||||||||||| || || ||| ||||| ||||| || || Sbjct 843 TCAGGAGGAATACCCTCTTTATCTTGAATCTTGGCTTTCACATTTTCTATAGTGTCGGAA 784 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 | || || ||||| || ||||| || || |||| ||||| | |||||||||||| || Sbjct 783 GCCTCCACCTCTAGGGTGATGGTCTTCCCCGTTAGGGTTTTTACGAATATCTGCATTGTA 724 >seq67196 Length=1848 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | ||| | ||| ||||||| ||||| ||||| || ||| Sbjct 9 ATACCACCACGGAGACGCAGTACAAGATGCAAAGTAGATTCTTTCTGAATATTGTAGTCA 68 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || || |||| || | |||||| ||||| || || | |||||| || || || Sbjct 69 GATAGGGTGCGCCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGTCTCTGCTGGTCTGGG 128 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||||||||| |||| ||||| | ||| Sbjct 129 GGGATCCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTGTCTGATGGCTCT 188 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||||||||| ||||||||||| || ||||||| ||| |||||||| Sbjct 189 ACCTCTAGAGTAATAGTTTTACCAGTCAAGGTTTTAACAAAGATCTGCAT 238 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || | ||| | || | ||||| ||||||||| ||| Sbjct 237 ATACCACCACGGAGACGCAAAACCAGATGAAGGGTGGATTCTTTTTGGATATTATAGTCA 296 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || || |||| || | ||||| ||||||||||| | | |||||||| || Sbjct 297 GATAGGGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAGACGTTGTTGATCTGGC 356 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || || ||| ||||| || | || || | || Sbjct 357 GGAATACCTTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATGGTGTCAGATGGCTCA 416 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| || ||||||||||| || ||||||| ||| |||||||| Sbjct 417 ACTTCTAGAGTGATAGTTTTACCAGTCAAGGTTTTAACAAAGATCTGCAT 466 >seq193007 Length=659 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | || || | || || || || |||| ||||| |||||| || || || Sbjct 403 ACCACCACGGAGGCGGAGAACCAAGTGCAATGTAGATTCTTTCTGGATATTGTAGTCGGA 462 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||| ||| |||| || | |||||| ||||||||||| | | |||||| || || || Sbjct 463 TAGTGTGCGTCCATCTTCAAGTTGTTTTCCAGCAAAGATAAGACGCTGTTGGTCTGGGGG 522 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| ||||| ||| ||||| |||| || || | ||| || Sbjct 523 AATACCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATAGTGTCCGATGGTTCAAC 582 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||| || ||||| ||||| | ||| || | ||| |||||||| Sbjct 583 TTCTAAAGTGATAGTTTTGCCAGTAAGTGTCTTGACAAAGATCTGCAT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981363633790050