Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq131719 264 1e-65 seq168888 129 6e-25 seq67196 118 1e-21 seq193007 96.9 3e-15 >seq131719 Length=2163 Score = 264 bits (292), Expect = 1e-65 Identities = 358/499 (72%), Gaps = 0/499 (0%) Strand=Plus/Plus Query 24829 GCTTACTTCGTCGAGTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCG 24888 ||||||||||| || ||||| ||||||| | || |||| |||| ||| ||||| Sbjct 1560 GCTTACTTCGTAGAATGGGGAGTGTATCCGAGGAAGTTCCCCGTGGACCGCGTGCCGATC 1619 Query 24889 CCCAATTTGTCGCACTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAAC 24948 |||||| || | |||||| | |||| ||| | ||||| ||||| ||||| ||||| ||| Sbjct 1620 CCCAATCTGACTCACTTGTTGTACGGGTTCATTCCGATCTGCGGAGGCGACGGCATCAAC 1679 Query 24949 GACGCTCTCAAAACAGTTCCCGGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGC 25008 ||| ||| || || || ||||| |||| || ||||| || ||| ||| ||| Sbjct 1680 GACAGTCTGAAGGAGATTGAGGGCAGTTTCCAGGCACTCCAGCGTTCCTGCAGCGGCCGC 1739 Query 25009 GACGATTTTAAGGTAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGC 25068 || || || || || ||||||| |||||||||||||| | |||||||| || || ||| Sbjct 1740 GAAGACTTCAAAGTGTCCATTCATGACCCCTGGGCCGCTCTTCAGAAACCACAAAAGGGC 1799 Query 25069 GTCTCCACTTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTA 25128 | || | |||||||| || |||||||| ||||| || ||| | ||| ||||| Sbjct 1800 CTTTCTTCATGGAACGAACCTTACAAAGGAAACTTCGGCCAACTGATGATGTTGAAACAG 1859 Query 25129 GCTAATCCACACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACCTTGTCAGATCCATTC 25188 || | ||| || | ||| | || | || ||||||||||||| ||| | ||||||||| Sbjct 1860 GCGAGACCAGACCTCAAGATTTTGCCTTCCGTCGGCGGCTGGACTTTGGCTGATCCATTC 1919 Query 25189 TTTCACATGCATGACGCGACCGTGCGTCAAACGTTCATCGATTCCGTCGAGGACTTTCTC 25248 ||| | | |||| ||| |||| | ||| | | |||||| | ||||| ||| Sbjct 1920 TTTTTCTTCACTGACAAGACAAAGCGTGACCGTTTCGTTGCTTCCGTAAAAGACTTCCTC 1979 Query 25249 TTGACTTGGAAGTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGG 25308 ||| ||||| || || ||||||||||| || || |||||||| || || || ||||| Sbjct 1980 CAGACCTGGAAATTCTTTGACGGCGTCGATATCGATTGGGAGTTCCCTGGAGGTAAAGGC 2039 Query 25309 GCCAATCCTCACGTCGGCA 25327 || || || | |||||| Sbjct 2040 GCTAACCCCAATCTCGGCA 2058 >seq168888 Length=4095 Score = 129 bits (142), Expect = 6e-25 Identities = 679/1066 (64%), Gaps = 25/1066 (2%) Strand=Plus/Minus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || || || ||||| | ||||||||||||||| ||||| || || | ||| | | | Sbjct 3186 GCAGCTGGCTTTGTTCTCAAATAATACATGCCGGTTTTAAGACCCATTTTCCAAGCATAA 3127 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 ||||||||| || | | |||| | || || || || || ||||| || || Sbjct 3126 AAGTGAATCGATGTTAATTTACCGTAATTTGGTTCAGCTACATGAATGTTAAAAGACTGA 3067 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTT-CAT 146750 ||||| || || || || | ||||| ||||| | ||| | ||||| | || Sbjct 3066 CTTTGGTCAATAAATGCACCCCTATCGGCAGCCATTTGAATTGTA-GTTTTAACAGACAC 3008 Query 146751 TTCCCAAGCGGTTTTGTACAGCCC-CTTAACGCTATCTGGAATACCTTCAATGTTTTGAA 146809 |||||| | || || || || | |||| || || |||||| |||| || ||||| | Sbjct 3007 CTCCCAAACAGTCTTATATAGATCTCTTATTTCTTTC-GGAATAGCTTCTATATTTTGTA 2949 Query 146810 TAGAGCCCTTGT-GCGCAAAAATAG-TGTTTCGTATTTCGGGCGTGTAAA---GGTTTAG 146864 | || || || | | | | | || | |||| | | | | ||| | || || Sbjct 2948 TTGACCCATTATTGTGTATTATAAGATTTTTCATGTCTTCATCCCACAAATCTGCTTCAG 2889 Query 146865 TTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACG 146924 || ||| | | |||| |||| ||||| || ||||| |||||||| | || || | Sbjct 2888 TTAAATCACG----CAAT-AAATGATGATTTACAACTTGGAACTCGCCAGACAAAACTCT 2834 Query 146925 TCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGC 146984 ||| | || | ||| |||||||| ||||| || ||||| || || | ||||| || Sbjct 2833 TCTTTGGTATATATTTGATGTGAAAGGTTCAAATGATTCATTGTTACCAAGAATTTGAGC 2774 Query 146985 CGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGAT 147044 ||||| ||| || ||||| || | || || ||||||| || ||| | | | || Sbjct 2773 CGTGGATGCTGTTGGCATAGGAGCTAATAATAAAGAATTTCTCAAACCATGCTTAGAAAT 2714 Query 147045 GTTGTCCTTCAAAGTTTGCCAGTCCCACA--TCGACGAGGGCGTCACGTTCCACATGTCG 147102 | || || |||| | ||||| ||| | ||| | ||| || | ||||||||||| Sbjct 2713 TCTTTCTTTTAAAGCATCCCAGTTCCAAAGGTCG--GTGGGGGTTTTGCTCCACATGTCG 2656 Query 147103 TACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGC 147162 || || | | ||| |||||| || || || || | || || || | Sbjct 2655 TATTGTAATATACCTTGACTGGATGGGCTTCCTTCGTAAGTGTCATAAACCCCATACTTT 2596 Query 147163 TGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTG 147222 | || | |||||| || || || || || || || || |||||||| ||||||| Sbjct 2595 TCTGCAAGTTCACAACTAGCTTCTAGTGCCCCGTAATAAATGGTTTCAAATATTTGTTGA 2536 Query 147223 TTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCC 147282 || || ||||| | || || || || | || |||| | ||||| | ||| || Sbjct 2535 TTAAGTTTCATCGCTGCATCACTTTCATATGCAATGCGCATCAAGACAAATGTATCTGCT 2476 Query 147283 AAACCCTGGATACCGACGCCGATAGGTCGATG-CTTTTCGTTGCTGCGCTTCGCGCTCGC 147341 | || || | ||| | || ||||| | ||| || | ||| | ||| || || Sbjct 2475 AGCCCTTGAACACCAATTCCTATAGGCCTATGCCTCATATTTGATTTTCTT-GCCTCCGG 2417 Query 147342 TATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTAT 147401 || |||||| || |||||| || || || | ||| | | || ||| || | Sbjct 2416 GATCGGATAGAAATTAACATCAATGATTTTATTTAAGTTTTGAGTAATAATTTTGGTGAC 2357 Query 147402 TGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGC 147461 | ||| | ||| | |||| ||| || |||| || || | ||||| || Sbjct 2356 TTCTTTTAATTTATTAAAATTATATGTTTTATCTT---CATTAACAAACATGTTCAAAGC 2300 Query 147462 GATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGC-GTCGCTGTACTGCACGATTTCGG 147520 ||||| || | ||| || || || || || || | || |||| | ||||| || | Sbjct 2299 AATAGATGCTAAATTACACACCGCGACTTCGTCAGCTGACG-TGTATTCAACGATCTCAG 2241 Query 147521 CGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACG 147580 ||| | ||| || |||||||| || || || | || || ||||||| || || | Sbjct 2240 TGCATAAGTTACTACATTTTATAGTGCCTAAGTTCTTTTGGTTACTTTTCCTGTTACAAG 2181 Query 147581 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 147626 |||||||| | ||||| || ||| || || || ||||| | ||| Sbjct 2180 CGTCTTTGTAAAGCATATAGGGTGTTCCCGTTTCAACTTGGGCTTC 2135 >seq67196 Length=1848 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||||| ||| | | | || |||||||| || || ||||| | ||| || | Sbjct 252 CGCAAAACCAGATGAAGGGTGGATTCTTTTTGGATATTATAGTCAGATAGGGTGCGGCCA 311 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| || | | |||| ||||| ||||||||||| || || ||||| ||| Sbjct 312 TCTTCAAGCTGTTTTCCAGCAAAGATCAGACGTTGTTGATCTGGCGGAATACCTTCCTTA 371 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | | ||| | || || | ||||| ||||| | || | Sbjct 372 TCCTGAATCTTGGCTTTGACATTTTCAATGGTGTCAGATGGCTCAACTTCTAGAGTGATA 431 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| ||||| | || |||||||| Sbjct 432 GTTTTACCAGTCAAGGTTTTAACAAAGATCTGCAT 466 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||||| | || ||||||||||| ||||| || || ||||| ||||| Sbjct 713 AACAAGATGTAAAGTGGATTCTTTTTGAATATTGTAATCTGACAAAGTACGGCCGTCTTC 772 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||| || || | | | || |||||||| |||||||| || || |||||||| || Sbjct 773 CAACTGCTTTCCAGCAAAAATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTGTCCTG 832 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||| | | || | |||||| | || || ||||| | || | |||||| Sbjct 833 AATCTTAGCTTTAACGTTCTCGATAGTATCTGAAGGTTCGACTTCCAAGGTGATCGTTTT 892 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| |||||| | |||||||||||| Sbjct 893 TCCAGTCAAAGTTTTCACGAAAATCTGCAT 922 >seq193007 Length=659 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||||| || | | || ||||| || || ||||||||| | || Sbjct 409 ACGGAGGCGGAGAACCAAGTGCAATGTAGATTCTTTCTGGATATTGTAGTCGGATAGTGT 468 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| || ||||| || | | |||| ||||||||||| ||||| || || || Sbjct 469 GCGTCCATCTTCAAGTTGTTTTCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATACC 528 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || |||||| ||| | | || | ||| || | || || ||||| | Sbjct 529 TTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATAGTGTCCGATGGTTCAACTTCTAA 588 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||| ||||| || || || | || ||||||||| Sbjct 589 AGTGATAGTTTTGCCAGTAAGTGTCTTGACAAAGATCTGCATG 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475139287588680