Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq131719 232 6e-56 seq131720 152 5e-32 seq67196 105 6e-18 seq15021 104 2e-17 >seq131719 Length=2163 Score = 232 bits (256), Expect = 6e-56 Identities = 348/492 (71%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 59935 GCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGATCGAGTGCCCACT 59994 || || || || |||||||| || ||||| || || || || || || || ||||| | Sbjct 1560 GCTTACTTCGTAGAATGGGGAGTGTATCCGAGGAAGTTCCCCGTGGACCGCGTGCCGATC 1619 Query 59995 CCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAAC 60054 || ||||| | || | | ||||| || |||||||| ||||| |||||||| |||||| Sbjct 1620 CCCAATCTGACTCACTTGTTGTACGGGTTCATTCCGATCTGCGGAGGCGACGGCATCAAC 1679 Query 60055 GACAGTCTTAAAACCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTCGA 60114 |||||||| || || || |||||| | || || ||||| || || || || Sbjct 1680 GACAGTCTGAAGGAGATTGAGGGCAGTTTCCAGGCACTCCAGCGTTCCTGCAGCGGCCGC 1739 Query 60115 GACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAACAA 60174 || ||||| ||||| || ||||| || || |||||||| | |||||||| ||||| Sbjct 1740 GAAGACTTCAAAGTGTCCATTCATGACCCCTGGGCCGCTCTTCAGAAACCACAAAAGGGC 1799 Query 60175 GTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAACTG 60234 | | | ||||||||||| |||||||| || ||||| ||| | ||| |||| | Sbjct 1800 CTTTCTTCATGGAACGAACCTTACAAAGGAAACTTCGGCCAACTGATGATGTTGAAACAG 1859 Query 60235 GCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGTTC 60294 || | || || |||| | ||||| || |||| || |||||| | | ||||| ||| Sbjct 1860 GCGAGACCAGACCTCAAGATTTTGCCTTCCGTCGGCGGCTGGACTTTGGCTGATCCATTC 1919 Query 60295 TTTTACTTTCAC-GATACGGATAAACGAAAGATTTTTGTAGATTCTGTCGTGGAGTTTCT 60353 |||| | ||||| || | | || || | ||| || | ||| || || || || Sbjct 1920 TTTTTC-TTCACTGACAAGACAAAGCGTGACCGTTTCGTTGCTTCCGTAAAAGACTTCCT 1978 Query 60354 ACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAAGG 60413 ||||| |||||||| || ||||| ||||| ||||| |||||||| || || || ||||| Sbjct 1979 CCAGACCTGGAAATTCTTTGACGGCGTCGATATCGATTGGGAGTTCCCTGGAGGTAAAGG 2038 Query 60414 TGCCAATCCCAA 60425 || || ||||| Sbjct 2039 CGCTAACCCCAA 2050 >seq131720 Length=1042 Score = 152 bits (168), Expect = 5e-32 Identities = 405/612 (66%), Gaps = 15/612 (2%) Strand=Plus/Plus Query 60523 TACGAGTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTCGTCGACTACACC 60582 ||||||||||| || || || || || ||||| ||| |||||||| |||| | Sbjct 80 TACGAGTTGACGTCTGCCATCAGTGCTGGTTGGGACAAGATCCAAGTCGTCGATTACAGC 139 Query 60583 GCTGCTCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTTAAAGGAGCCTGG 60642 || || || |||| | || || || || |||| |||||||| || ||||| ||| Sbjct 140 GCAGCGCAGAAATACATGGACCACATATTCTTCATGAGCTACGATTTCAAGGGAGCGTGG 199 Query 60643 TCGAATAACGATCTGGGCTATCAGACTACTCTATACGCTCCTTCGTTTAATCCTAAAGAA 60702 || ||| | ||| || | ||| || |||| |||||||| || | | || || || Sbjct 200 TCCAATGATACTCTTGGTCACCAGGCTTCTCTGTACGCTCCATCTTGGCAGCCGAAGGAG 259 Query 60703 CATTATACTACCGATTTTGCCGTTCGTGCTCTACTCAA--GCAAAAAGTCGAGAAT---a 60757 ||| || || ||||| | ||| | |||| || || || | |||| | Sbjct 260 ACTTACACGACTGATTTCGGCGT----GAAATACTTGTTGGCGCAAGGT-GTGAATCCTA 314 Query 60758 aaaaaaTTATTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGTAAGCGATTTTG 60817 | || ||| | || || || ||||||||||| || ||||||||||| || || || || Sbjct 315 AGAAGATTGTGGTTGGTGTTGCCATGTACGGACGTGGCTGGACCGGTGTCCACGGTTATG 374 Query 60818 TTGACGATAATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAACATGGGAAG 60877 | | | | ||||| || | || | || | ||| || || ||||| || ||| ||| Sbjct 375 ---AAGGTGACAATCCTTTCACTGGCAATGCAACGGGTCCTGTTAAAGGTACTTGGCAAG 431 Query 60878 ACGGAGTCGTCGACTATAGAGAGATTTTCAATAATTTCGTCGCCAATAACCCGATGGAAT 60937 | || || || ||||| ||||| || || || | | || || | | | Sbjct 432 ATGGTGTGGTGGACTACAGAGAAATAGCAGATGATATAGCTGCTGGGAAATGGGAGTACC 491 Query 60938 ATTACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAACTCGACCGGCGAGCTCATCA 60997 |||| ||| || ||| ||||| | ||||| || | || | ||||| || || || | Sbjct 492 ATTATGATAAGGTGGCACAAGCGCCATACGTGTTCAGGAAGGCCACCGGAGATCTAATAA 551 Query 60998 CTTACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATTGGACTATAGCTTGG 61057 | |||||| || | | || ||| | || |||| ||||| || | | | |||| Sbjct 552 CGTACGACGATGCCAGATCAGTTATAGAGAAAGGCAAATACGTCAGAAATAACAAATTGG 611 Query 61058 GTGGTTTGTTCGCTTGGGAGATCGACGCCGACAACGGATTAC-TTCTAAACGCCATGAAC 61116 ||||||||||||| ||||| || ||||| ||||| || | || | | || || |||||| Sbjct 612 GTGGTTTGTTCGCGTGGGAAATTGACGCGGACAATGG-TGACATATTGAATGCTATGAAC 670 Query 61117 AGCGGTCTCGGC 61128 | ||||||||| Sbjct 671 ATGGGTCTCGGC 682 >seq67196 Length=1848 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| || || |||||| ||||||| | ||||||||| | Sbjct 922 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACGATCACCTTGGAAGTCGAACCTTCA 863 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||||||| | || ||| || ||| || ||||| ||||| || || |||||| Sbjct 862 GATACTATCGAGAACGTTAAAGCTAAGATTCAGGACAAAGAAGGTATCCCCCCAGATCAG 803 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || | || |||| | || || || | ||||| | | | ||||| ||||||| Sbjct 802 CAGCGTCTGATTTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACTTTGTCA--GATTACA 745 Query 25353 ATATTCAAAAAGAATCCAC 25371 ||||||||||||||||||| Sbjct 744 ATATTCAAAAAGAATCCAC 726 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || || ||| | || || | || || || |||| | Sbjct 238 ATGCAGATCTTTGTTAAAACCTTGACTGGTAAAACTATTACTCTAGAGGTAGA-GCCATC 180 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| ||| | |||||| || ||| ||||| ||||| || || || || || Sbjct 179 AGACACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGGATCCCCCCAGACCA 120 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| |||| || ||||||||||| ||||||| | | | || ||||| Sbjct 119 GCAGAGACTGATTTTCGCTGGCAAACAACTTGAAGATGGGCGCACCCTATCTGACTACAA 60 Query 25354 TATTCAAAAAGAATCCAC 25371 |||||| |||||||| || Sbjct 59 TATTCAGAAAGAATCTAC 42 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || || ||| | ||||| | ||||| || |||| | Sbjct 466 ATGCAGATCTTTGTTAAAACCTTGACTGGTAAAACTATCACTCTAGAAGTTGA-GCCATC 408 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| || ||| ||||| || ||||| ||||| ||||| Sbjct 407 TGACACCATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGTATTCCGCCAGATCA 348 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || || | | || ||||| || ||||||| | | | || || || Sbjct 347 ACAACGTCTGATCTTTGCTGGAAAACAGCTTGAAGATGGCCGCACCCTATCTGACTATAA 288 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||| ||||||||||||||| ||||| | || || Sbjct 287 TATCCAAAAAGAATCCACCCTTCATCTGGTTTT 255 >seq15021 Length=1916 Score = 104 bits (114), Expect = 2e-17 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 25159 TTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGAT 25218 |||||| || |||| |||| | || |||||||| |||| || || | ||||| | Sbjct 714 TTTTCAGTTTTACAA--TGCAGATATTCGTAAAAACCCTAACGGGGAAGACCATCACCCT 771 Query 25219 CGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGG 25278 || || || || ||| ||||| || | || ||| || ||| ||||||||||| Sbjct 772 AGAGGTGGAGGCTTCCGACACTATAGAAAATGTGAAAGCCAAGATTCAAGATAAAGAGGG 831 Query 25279 TATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA 25338 ||| || || ||||| ||| || | || | | || |||||| | ||||| | | | Sbjct 832 TATTCCTCCTGATCAACAACGATTGATCTTTGCTGGTAAACAATTGGAAGACGGCCGCAC 891 Query 25339 TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGG 25398 | |||||||||||||| |||||||| || |||| || |||||||| | ||||| Sbjct 892 ACTTTCTGATTACAATATTCAGAAAGAATCTACTCTTCACTTGGTGTTAAGGCTCAGAGG 951 Query 25399 AGGAAA 25404 ||| || Sbjct 952 AGGTAA 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443719820528160