Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq8700 178 3e-39 seq10252 127 4e-24 >seq8700 Length=5779 Score = 178 bits (196), Expect = 3e-39 Identities = 283/404 (70%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 61088 TCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGAC 61147 ||||||||||||||| ||| |||||||||||||| |||| ||||||||| |||| ||| Sbjct 786 TCAAGCATCAACATCAGAATTGTATGGAAAAGTTGTGGAAACTCCTCAAACTGAAAAGAC 727 Query 61148 TCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAA 61207 || |||||||| | || || |||| ||||| ||| | || | |||||||| || Sbjct 726 ACCATTTTATCCAAGAAGTCCATATGCAGTTGCTAAATTGTATGGCTACTGGATCATTAT 667 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAG 61267 |||||||| || | || || |||| || |||||| |||| || ||||| || Sbjct 666 TAATTACCGTGAAGCCTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAATC 607 Query 61268 TCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTT- 61326 || | |||||| | | || ||||| || ||||| || | | || || || |||| Sbjct 606 GCCAAGAAGAGGTGAGAATTTCGTGACACGAAAAATCACCAGATCAGTCGCTAAAATTTC 547 Query 61327 -TTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGA 61385 |||| | || ||| | || | || || || | || || ||| | |||||||| Sbjct 546 ATTAA--ATCAACAAGAATTCTTGGAACTTGGTAATCTTGATTCAAAACGTGATTGGGGT 489 Query 61386 TATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGAC 61445 |||| | || || | || ||||||||| ||||||| || || |||| ||||| ||| Sbjct 488 CATGCTAAGGACTACGTAGAAGCTATGTGGATGATGTTACAGCAGGATAAACCAGAAGAC 429 Query 61446 TACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTCGT 61489 | || ||||| || ||| |||| ||||| || || || || Sbjct 428 TTTGTAATTGCTACAGGAGAGACTCGCAGTGTTCGAGAGTTTGT 385 >seq10252 Length=19166 Score = 127 bits (140), Expect = 4e-24 Identities = 317/472 (67%), Gaps = 16/472 (3%) Strand=Plus/Minus Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618 ||||||| || ||||| || || ||||| || ||||||||||| | ||||| || Sbjct 14649 GGATTATGACATGGAATCTTTGTTGACCATCCAGTTCCAATACCTTCGGCGCCATTAACG 14590 Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATAC 281678 | ||| | || ||||| || | |||| |||| || |||||| | | || |||| | Sbjct 14589 AGAATCATAGGAATAATTGGCATATAAAATTCAGGCTCAATTCGTTGATTGTCTTCATCC 14530 Query 281679 AAATACTTCAGAA---GGTTATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTC 281735 ||| | |||| | | | ||||| || || || | || | || | || ||||| Sbjct 14529 AAAAAGTTCAACAATGGATCATCATGTGGATGGAAAATAA---GACGTG-CTAAGGGTGA 14474 Query 281736 A-GTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCC 281794 | | | |||||||| || | | ||| || ||||| || || | | | || Sbjct 14473 AAGCATTGTGAAGATGTAACGAGGACTTGCAGAATCTTTTCCGCCTGATAAACGTGTACC 14414 Query 281795 AAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAG 281854 ||||||||| | || | | | ||||||||||| || || || || | ||||||| Sbjct 14413 AAACTGACCGTTAGGTTGAAGCAAATTAATGTTATTACTTCCAACATAGTTTTGAGCCAA 14354 Query 281855 GTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAAC 281914 || | ||||| || ||| || || |||||||| ||||| || || ||| ||||| Sbjct 14353 ATTAATAATTGTACCGCAAAGTGAAACTTCACCGTGATGATATGCACTCATTTCAGCAAC 14294 Query 281915 ATAACCACTGAACTGTGCTACCTTCACGTC--TGATGTCAAGTTGCGTTTGAAAGC--GC 281970 | ||||| || ||||| ||||| || || | | || ||| ||||| |||| | Sbjct 14293 AGAACCAGCCAATTGTGCGACCTTAACTTCCTTCTTATC--GTTACGTTT-TAAGCATGT 14237 Query 281971 AATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAAT 282022 || ||| | ||| |||||| ||||||||||||||||| || | ||||| Sbjct 14236 AA-ATATGATTTTACGTTGACCTGGCTTGAAACCATCAACAACGCATGGAAT 14186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057421776638510