Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq9081 192 6e-44
>seq9081
Length=2203
Score = 192 bits (212), Expect = 6e-44
Identities = 474/712 (67%), Gaps = 14/712 (2%)
Strand=Plus/Plus
Query 15934 TTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGT 15993
||| ||||||||||| || ||||| | || || ||||||||| || ||||| |
Sbjct 71 TTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAATTCCATAAATGAGAATGGATTTTT 130
Query 15994 AGCTGAAAATATCTTAG--AGTACCCCAGTTC-CGTAACTAATCTATCTGCTACAAATTC 16050
| | | | ||| ||| |||| ||| | ||| ||| ||| ||||| |||||
Sbjct 131 GGTATTATAGACCTTGTCAAGT--CCCAATTCGCCTAATAAATG-ATCGGCTACGAATTC 187
Query 16051 TATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGT 16110
|| |||| | ||||||| || ||||| || || | | ||| ||||| || | ||
Sbjct 188 AATGTATTCAGACATTAAATCACAATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGT 247
Query 16111 TAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGA 16170
||||||| | ||| ||| || || ||| | || || || ||||| || |
Sbjct 248 CAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAATTTCAACAACTCGTTCTTTTGG 307
Query 16171 CGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTC 16230
|| | || | || ||||| |||||| || || ||||| | ||| |||||||||||
Sbjct 308 TGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTC 367
Query 16231 TCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCA 16290
||| |||||||| || || || || || ||||||||| ||| || ||||| | |||
Sbjct 368 TCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCA 427
Query 16291 GAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAA 16350
|| || || ||||| || |||||| || ||||| |||| ||||| || || |
Sbjct 428 AAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAAC 487
Query 16351 TCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTG 16410
|||||| | | | |||| ||| | ||||| || |||| || || ||||
Sbjct 488 TCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTT 547
Query 16411 TTTTATACAATCCATCGTTTCTATGGCCTTAAACAA----TTTCTCTTTTTCCTGAATAT 16466
|||| || | || || || || || || || | | || || || ||
Sbjct 548 CTTTACGCACGGTAAAGTCTCAATAGCATTGAATAAGAAGTCACGCTGCTT--TGCATCA 605
Query 16467 CGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTA 16526
|| ||||| || ||||| || | |||||| |||||||||| || || || || |
Sbjct 606 CG--GATATAAGTTTCAATTAGAATCGAGTACATCTCTGAGTGTACATTTTCCATAGCAA 663
Query 16527 TCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG 16586
| || |||||||| ||| ||||||| || | || ||| |||||| ||||||||
Sbjct 664 TTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAA 723
Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638
| ||||||||| || || ||||| ||||||||| || || |||| |||
Sbjct 724 TTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGAATGCTAATACGTG 775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511224684435640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |