Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9081 192 6e-44 >seq9081 Length=2203 Score = 192 bits (212), Expect = 6e-44 Identities = 474/712 (67%), Gaps = 14/712 (2%) Strand=Plus/Plus Query 15934 TTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGT 15993 ||| ||||||||||| || ||||| | || || ||||||||| || ||||| | Sbjct 71 TTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAATTCCATAAATGAGAATGGATTTTT 130 Query 15994 AGCTGAAAATATCTTAG--AGTACCCCAGTTC-CGTAACTAATCTATCTGCTACAAATTC 16050 | | | | ||| ||| |||| ||| | ||| ||| ||| ||||| ||||| Sbjct 131 GGTATTATAGACCTTGTCAAGT--CCCAATTCGCCTAATAAATG-ATCGGCTACGAATTC 187 Query 16051 TATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGT 16110 || |||| | ||||||| || ||||| || || | | ||| ||||| || | || Sbjct 188 AATGTATTCAGACATTAAATCACAATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGT 247 Query 16111 TAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGA 16170 ||||||| | ||| ||| || || ||| | || || || ||||| || | Sbjct 248 CAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAATTTCAACAACTCGTTCTTTTGG 307 Query 16171 CGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTC 16230 || | || | || ||||| |||||| || || ||||| | ||| ||||||||||| Sbjct 308 TGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTC 367 Query 16231 TCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCA 16290 ||| |||||||| || || || || || ||||||||| ||| || ||||| | ||| Sbjct 368 TCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCA 427 Query 16291 GAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAA 16350 || || || ||||| || |||||| || ||||| |||| ||||| || || | Sbjct 428 AAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAAC 487 Query 16351 TCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTG 16410 |||||| | | | |||| ||| | ||||| || |||| || || |||| Sbjct 488 TCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTT 547 Query 16411 TTTTATACAATCCATCGTTTCTATGGCCTTAAACAA----TTTCTCTTTTTCCTGAATAT 16466 |||| || | || || || || || || || | | || || || || Sbjct 548 CTTTACGCACGGTAAAGTCTCAATAGCATTGAATAAGAAGTCACGCTGCTT--TGCATCA 605 Query 16467 CGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTA 16526 || ||||| || ||||| || | |||||| |||||||||| || || || || | Sbjct 606 CG--GATATAAGTTTCAATTAGAATCGAGTACATCTCTGAGTGTACATTTTCCATAGCAA 663 Query 16527 TCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG 16586 | || |||||||| ||| ||||||| || | || ||| |||||| |||||||| Sbjct 664 TTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAA 723 Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638 | ||||||||| || || ||||| ||||||||| || || |||| ||| Sbjct 724 TTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGAATGCTAATACGTG 775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511224684435640