Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq3947 196 4e-45
>seq3947
Length=2916
Score = 196 bits (216), Expect = 4e-45
Identities = 501/753 (67%), Gaps = 10/753 (1%)
Strand=Plus/Plus
Query 18600 AATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTG 18659
||||| || || ||||||| | || || || || || || |||||| | | ||||
Sbjct 933 AATTTACGGGATCAATTTCCATTGTTGACAACCAAACGAGTATTTTGGCGAGGAGTCGCT 992
Query 18660 GAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGAT 18719
|| ||| | |||||||| || || || || ||| | ||| || || || ||
Sbjct 993 GAGGAGCTTTTATGGTTCATAAAAGGTTCCACAGATGCTAAATTGCTTCAAGCGAAGAAT 1052
Query 18720 ATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAAT--GGCTTCCATA 18777
|||| || ||||| | || | || | |||| || || | || || || ||
Sbjct 1053 ATACGAATTTGGGACGGAAACAGTACGCGTGAATTCCTCGAT--GCATCCGGTTTTAATG 1110
Query 18778 AAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGG 18837
| | || ||| || | || || |||| || || || ||| | |||||||| ||
Sbjct 1111 AGCGTCAAGTGGGTGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCCC 1170
Query 18838 AATATAAAGACTGTCAATCAA-ACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTT 18896
||||||| ||| | |||| | ||| | |||||||| ||||| | || ||||
Sbjct 1171 AATATAA-GACATGCGATCATGAATATGACAAACAAGGAATTGATCAATTAAAAGATGTT 1229
Query 18897 ATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCA 18956
|| || |||||| | || ||| | |||||||| ||| || | |||||||||
Sbjct 1230 ATTGAACGCATTAAATCTAATCCAAATGATCGACGAATTATTTTAAGTGCCTGGAATCCA 1289
Query 18957 AAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGT-CAGTTTTACGTTGC 19015
|||||| || ||||| ||| || |||||||| || || |||||||| || ||
Sbjct 1290 GTGGATATTCCACAAATGGCACTTCCACCATGTCATT-GTCTGGTACAGTTTTATGTCGC 1348
Query 19016 AAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACC 19075
||| || || || |||||| ||||||| ||||| | |||||||| || || || ||
Sbjct 1349 AAATGGCGAGTTGAGTTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGGAGTTCC 1408
Query 19076 GTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135
|| || || || ||| || || | || ||||| | || ||||||||| | ||||
Sbjct 1409 TTTTAATATCGCATCATACGCTCTATTGACGTACATGATTGCTCATGTTACAA-ATTTAA 1467
Query 19136 AACC-GGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATG 19194
| || || ||||| ||||||| | || ||||| ||||||||| |||||| || ||
Sbjct 1468 AGCCTGGCGATTTTGTTCATACTTTTGGTGATGCTCATATTTACACGAATCACATTGAGC 1527
Query 19195 CTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAA 19254
|| | |||| ||| || | || ||| || || || || ||||| | ||
Sbjct 1528 CTCTCAAAGAGCAACTCGAACGCAACCCTCGTCCATTCCCACAGCTAAAAATCAAGCGTC 1587
Query 19255 ATGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCAC 19314
| || | |||| | |||||||| | || ||||| | | ||||||| ||||
Sbjct 1588 AAGTTCCTAATATCGATGACTTTAAGTTTGAAGATTTCGAAGTCATTGGATATGATCCTT 1647
Query 19315 AccccccccTAAAAATGGAAATGGCTCTTTAAT 19347
| || ||| | ||||||||||||||| ||||||
Sbjct 1648 ATCCACCCATCAAAATGGAAATGGCTGTTTAAT 1680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399359504022465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |