Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3947 196 4e-45 >seq3947 Length=2916 Score = 196 bits (216), Expect = 4e-45 Identities = 501/753 (67%), Gaps = 10/753 (1%) Strand=Plus/Plus Query 18600 AATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTG 18659 ||||| || || ||||||| | || || || || || || |||||| | | |||| Sbjct 933 AATTTACGGGATCAATTTCCATTGTTGACAACCAAACGAGTATTTTGGCGAGGAGTCGCT 992 Query 18660 GAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGAT 18719 || ||| | |||||||| || || || || ||| | ||| || || || || Sbjct 993 GAGGAGCTTTTATGGTTCATAAAAGGTTCCACAGATGCTAAATTGCTTCAAGCGAAGAAT 1052 Query 18720 ATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAAT--GGCTTCCATA 18777 |||| || ||||| | || | || | |||| || || | || || || || Sbjct 1053 ATACGAATTTGGGACGGAAACAGTACGCGTGAATTCCTCGAT--GCATCCGGTTTTAATG 1110 Query 18778 AAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGG 18837 | | || ||| || | || || |||| || || || ||| | |||||||| || Sbjct 1111 AGCGTCAAGTGGGTGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCCC 1170 Query 18838 AATATAAAGACTGTCAATCAA-ACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTT 18896 ||||||| ||| | |||| | ||| | |||||||| ||||| | || |||| Sbjct 1171 AATATAA-GACATGCGATCATGAATATGACAAACAAGGAATTGATCAATTAAAAGATGTT 1229 Query 18897 ATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCA 18956 || || |||||| | || ||| | |||||||| ||| || | ||||||||| Sbjct 1230 ATTGAACGCATTAAATCTAATCCAAATGATCGACGAATTATTTTAAGTGCCTGGAATCCA 1289 Query 18957 AAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGT-CAGTTTTACGTTGC 19015 |||||| || ||||| ||| || |||||||| || || |||||||| || || Sbjct 1290 GTGGATATTCCACAAATGGCACTTCCACCATGTCATT-GTCTGGTACAGTTTTATGTCGC 1348 Query 19016 AAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACC 19075 ||| || || || |||||| ||||||| ||||| | |||||||| || || || || Sbjct 1349 AAATGGCGAGTTGAGTTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGGAGTTCC 1408 Query 19076 GTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || || || || ||| || || | || ||||| | || ||||||||| | |||| Sbjct 1409 TTTTAATATCGCATCATACGCTCTATTGACGTACATGATTGCTCATGTTACAA-ATTTAA 1467 Query 19136 AACC-GGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATG 19194 | || || ||||| ||||||| | || ||||| ||||||||| |||||| || || Sbjct 1468 AGCCTGGCGATTTTGTTCATACTTTTGGTGATGCTCATATTTACACGAATCACATTGAGC 1527 Query 19195 CTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAA 19254 || | |||| ||| || | || ||| || || || || ||||| | || Sbjct 1528 CTCTCAAAGAGCAACTCGAACGCAACCCTCGTCCATTCCCACAGCTAAAAATCAAGCGTC 1587 Query 19255 ATGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCAC 19314 | || | |||| | |||||||| | || ||||| | | ||||||| |||| Sbjct 1588 AAGTTCCTAATATCGATGACTTTAAGTTTGAAGATTTCGAAGTCATTGGATATGATCCTT 1647 Query 19315 AccccccccTAAAAATGGAAATGGCTCTTTAAT 19347 | || ||| | ||||||||||||||| |||||| Sbjct 1648 ATCCACCCATCAAAATGGAAATGGCTGTTTAAT 1680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399359504022465