Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3947 163 2e-35 >seq3947 Length=2916 Score = 163 bits (180), Expect = 2e-35 Identities = 429/645 (67%), Gaps = 10/645 (2%) Strand=Plus/Minus Query 101677 TTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTC 101736 ||| |||| |||||||||| || || |||||||| || | |||||| | ||| || Sbjct 1535 TTTGAGAGGCTCAATGTGATTCGTGTAAATATGAGCATCACCAAAAGTATGAACAAAATC 1476 Query 101737 TCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAAT 101796 |||||| || ||| || ||||||||||||||| | || || |||| || || || Sbjct 1475 GCCAGGCTTTAAATTTGTAACATGAGCAATCATGTACGTCAATAGAGCGTATGATGCGAT 1416 Query 101797 GTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTT 101856 ||||| || ||||| | |||||||||||||||||||| || | ||| || | || Sbjct 1415 ATTAAAAGGAACTCCGAGACCCATATCAGCTGATCTTTGGTATAATTGGCAACTCAACTC 1356 Query 101857 TCCATCACAGACATAAAATTG-ACTTAATACATGACAAGGCGGCAACACCATTTTAGGAA 101915 |||| ||||||||| || || | | |||||| || || | |||||| |||| Sbjct 1355 GCCATTTGCGACATAAAACTGTACCAGACA-ATGACATGGTGGAAGTGCCATTTGTGGAA 1297 Query 101916 TGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAG 101975 | || |||||| |||| | | || | || ||| | || || | ||| || Sbjct 1296 TATCCACTGGATTCCAGGCACTTAAAATAATTCGTCGATCATTTGGATTAGATTTAATGC 1237 Query 101976 TATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCT- 102034 ||||| | | ||||||||| |||| ||||| | | ||| || | | || | Sbjct 1236 GTTCAATAACATCTTTTAATTGATCAATTCCTTGTTTGTCATATTCATGATC-GCATGTC 1178 Query 102035 TTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCA 102094 ||||||| || || ||||| | ||| ||||||||||| || || || | ||| || | Sbjct 1177 TTATATTGGGCACCAAAATGACGCCATTGAAATCCATAAACTGGACCCAAATCACCCACT 1118 Query 102095 TCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAAT- 102153 | | |||| |||||| | ||| | ||| | | | || | |||||||| Sbjct 1117 TGACGCTCATTAAAACCGGATGCATCGAGGAATTCACGCGTACTGTTTCCGTCCCAAATT 1058 Query 102154 -GTGCACGC-CAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAAC 102211 || | | ||| ||| ||| ||| || || || ||| | || ||||| || Sbjct 1057 CGTATATTCTTCGCT--TGA-AGCAATTTAGCATCTGTGGAACCTTTTATGAACCATAAA 1001 Query 102212 AGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTT 102271 || || ||| | || |||| ||||||||||| || || || || | |||||||| || Sbjct 1000 AGCTCCTCAGCGACTCCTCGCCAAAATACTCGTTTGGTTGTCAACAATGGAAATTGATCC 941 Query 102272 TCTAAACTAAACCTAGACTGTGTTCCAAAAATACTCAGTGTTCCA 102316 |||| |||| | |||| ||||| ||||| | |||||| Sbjct 940 CGTAAATTAAAGCGCATTTGTGCACCAAATATACTGACAGTTCCA 896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361120539617927