Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5596 443 2e-119 seq9081 262 5e-65 >seq5596 Length=16775 Score = 443 bits (490), Expect = 2e-119 Identities = 1083/1634 (66%), Gaps = 33/1634 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 || |||||||| | | | || | ||| || | || || |||||||| ||||| || Sbjct 11259 GTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTTTTAAGT 11318 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | ||||||| |||||||| ||| ||| | ||| |||| | || || |||| | Sbjct 11319 CCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCCGCTACA 11378 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || ||||| | ||||||||||||||||| || ||||| | || || ||||||| || Sbjct 11379 TGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCATTTGAATT 11438 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 ||||| | |||||||| | |||||||||| |||||||| || |||| Sbjct 11439 TGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCATCAGGAA-- 11496 Query 53048 TTTG-----TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 53102 ||| || || || || ||| || | | ||||| |||||| || ||||||| Sbjct 11497 TTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCATGTCATCAT 11556 Query 53103 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 53162 |||||| | || || ||| | ||| ||||| ||||||| |||||||| |||| Sbjct 11557 CCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTTGAAACTCTC 11616 Query 53163 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 53222 || | || | ||| | |||| |||||| || |||||||| | | ||||||||| | Sbjct 11617 CACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCTCATTATTAC 11676 Query 53223 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 53282 | ||||| ||||| ||||||||||| ||||| ||||| | || || ||| | ||||| Sbjct 11677 CTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAATTACGAAGAC 11736 Query 53283 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 53342 | | | ||||||| ||||||| | |||||||| ||| | || | ||| Sbjct 11737 CAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTGGTGTCTTTT 11796 Query 53343 NNNNNNNNNNNNNTTGTAGAATACC----GTTACTGGCGTACGATCCTACATATGTATCG 53398 ||||| ||||| | |||||| || ||||| |||| || || Sbjct 11797 CCCACATATCATATTGTAATATACCTTTTGATACTGG---AC-ATCCTTCATACGTCTCA 11852 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 || | ||| || ||||| | |||||| |||| |||||| || || |||||||| || Sbjct 11853 TAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATAAATTGTC 11912 Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGA 53516 || || || | | ||||| || ||||| ||| | || |||| | | | Sbjct 11913 TCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGAC--TCGTATGGCATTCTCATCA 11970 Query 53517 GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576 ||||| || || ||||||||||||| ||||| ||||| || | |||||| || | Sbjct 11971 ATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAAAGTTTG 12030 Query 53577 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC--- 53633 | || ||||||| || ||||| |||||| || ||||||||||| | |||| Sbjct 12031 ATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAATTTCTTG 12090 Query 53634 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGT---CCATCT---A 53687 |||| || ||||| || ||||||| ||| | |||||| ||| | | || | Sbjct 12091 TGACTAT--CTTTG-TGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATTTGGCT 12147 Query 53688 TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 | |||||||| || || ||||| ||||| | |||||| || || || |||| | | Sbjct 12148 TGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTTACTTG 12207 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 |||||| | || ||||| || | ||| || ||| ||||| | ||| ||||||| Sbjct 12208 AATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGAT 12267 Query 53808 TACTCTTTTTG-TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 | | ||| | ||||| ||||||||||| || || | || || || || |||| || Sbjct 12268 T-CGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAACTTGA 12326 Query 53867 GATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT 53926 ||||| ||||| || ||| | | | ||||||| | | | ||| |||| Sbjct 12327 GATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTCCTTCT 12386 Query 53927 CTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986 ||| ||| | |||| | |||||| || | || || | | | || ||| Sbjct 12387 GCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGACCTGGA 12446 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 || || |||||||| || |||||| | | | | | || |||| |||||| | Sbjct 12447 CAGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAACAAG 12506 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 ||||||||||| | ||| ||| | |||||| | | | ||| || ||||| ||||| Sbjct 12507 TCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATTT 12566 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || || | ||| || ||| | | || ||| |||||| |||||||| || | | | Sbjct 12567 TTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAAT 12626 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | ||||| ||||| || || || ||||| | || | || || ||||| ||||||||| Sbjct 12627 GCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAACTCTC 12686 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 ||||| || | | |||||| || ||||| || || | ||||| | || | | | Sbjct 12687 AACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTTTGAA 12746 Query 54287 CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 |||||| | || | || || || ||||| ||| |||| |||||| | Sbjct 12747 CGAATACAATGAACATTAACGCCAATTCCACCTGCTGATTTGCTAATTAGCGCGCATTGC 12806 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 ||||| || ||||| || ||||| || ||||| ||| || ||||| || | Sbjct 12807 TTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAGAAGAAAGCATGAA 12866 Query 54407 GACATTTGGTGACG 54420 |||| ||| |||| Sbjct 12867 GACAATTGAGGACG 12880 Score = 156 bits (172), Expect = 5e-33 Identities = 319/467 (68%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 54468 TTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTA 54527 ||||||| | |||||||| ||||| ||||||| || |||||| | |||||| || | Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050 Query 54528 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCA 54587 | || || | ||| | ||| || || || | ||| | || || || || || | || Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110 Query 54588 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 54647 ||| | ||| || |||||||||||||||||||||||| || ||||| || || | Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170 Query 54648 TAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTG-AA 54706 | ||| |||| || ||| ||| || ||| ||| | | ||| | | | | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCT-TATGATGGAATTCGCTA 13229 Query 54707 ATAATCGGAGAAT--GT-TTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763 || || || || | || || || || | || |||| ||| | | ||| | ||| Sbjct 13230 ATCATTGGGGATTTAGTCTTTAGATATTCA--TTTTCCATA-TTATAAAGATCATCCATG 13286 Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823 ||||||||||| |||| || || |||||||| || || || | ||| ||||| || ||| Sbjct 13287 ACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCAGCT 13346 Query 54824 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTG 54883 | || |||||||| | ||| | |||||| || |||||| |||| |||| | | | Sbjct 13347 AAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAATTA 13406 Query 54884 TCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 54930 |||| ||| ||||||||||| |||| | || | ||| || || Sbjct 13407 TCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTT 13453 >seq9081 Length=2203 Score = 262 bits (290), Expect = 5e-65 Identities = 572/846 (68%), Gaps = 13/846 (2%) Strand=Plus/Plus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 ||||| ||||| | ||||| ||||| || || | ||| || || ||||| || || Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCC 92 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948 || | ||| || |||||| || | ||||||| | |||||||| | | || | Sbjct 93 TCAAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGT 152 Query 23949 CCCAATTCAGA-AATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACA 24007 |||||||| ||| ||| ||| || || || || || ||| ||| | ||||| Sbjct 153 CCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCACA 211 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 |||||| || | | || |||||||| || |||| | |||||| | |||||| || Sbjct 212 ATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTAC 271 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC--AATAA-ATGTTT 24124 || ||||| ||||| ||| ||||| | ||||| | | ||||| |||||| Sbjct 272 AGCCTCTGTGATAATTTCAACAACTCGTTCTT---TTGGTGGCTTCTGAATAAGATGTTT 328 Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184 |||| || ||||| || || | || || || |||||||| ||| | ||| || || Sbjct 329 GTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGA 388 Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 24244 || || | || ||||||| |||||||| |||| |||||| || | ||||| ||| Sbjct 389 GAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCC 448 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC--G 24302 | ||||||||| || || || || ||||||||||||| || ||| ||| | || | Sbjct 449 ACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATG 508 Query 24303 CTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 || | | |||||| ||| ||||| || ||||| || ||||| || || | ||||| Sbjct 509 CTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTC 568 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 |||||||| || | ||| | || ||| | ||| || ||||| | || Sbjct 569 AATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAAT 628 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 ||||| || || || | ||||| || || ||||| ||||| || || ||| ||| Sbjct 629 CGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGC 688 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || || | || ||||| || |||||||| ||| || ||||| || || ||||| Sbjct 689 TTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTC 748 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGTT 24600 || ||||| || || ||||| ||| ||||| | | || | | | ||| || Sbjct 749 TGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCT-TTAATT 807 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 | | ||| ||| | |||||||| |||| ||| |||||||| |||||||| || ||| | Sbjct 808 TTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTT 867 Query 24661 CTGCCT 24666 | |||| Sbjct 868 CAGCCT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593501351550960