Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq8363 104 2e-17
seq3668 86.0 6e-12
>seq8363
Length=52898
Score = 104 bits (114), Expect = 2e-17
Identities = 157/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| | ||||| || || || ||| |||| ||||| |||| |
Sbjct 26555 ATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGA-GCCATC 26497
Query 40750 G-ACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
| ||| | || ||| | | |||| ||||||| || ||||| || || || | || |
Sbjct 26496 GGACACGATTGAAAATGTT-AAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAGATC 26438
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
| |||||| | |||| || || ||||| | || || | ||||| | | ||||||||
Sbjct 26437 AACAACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACTACA 26378
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
| || ||||| ||| | || || || |||||||||||
Sbjct 26377 ATATTCAGAAAGAGTCAACACTTCACTTAGTGTTGCGC 26340
>seq3668
Length=32275
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| |||||||| ||||| ||||| | || || ||||||||||| | || || || |
Sbjct 30671 AAGATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCT 30730
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | ||| |||||| ||| || | |||||||| || || || | ||
Sbjct 30731 TCTGACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGAT 30790
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|| ||||| | |||| ||| || ||||| |||| || | || || | | ||||||
Sbjct 30791 CAACAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTAC 30850
Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893
|| ||||| ||||| | || |||||
Sbjct 30851 AATATCCAAAAGGAATCAACATTGCAT 30877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515028072997520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |