Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq3947 181 7e-41
>seq3947
Length=2916
Score = 181 bits (200), Expect = 7e-41
Identities = 290/414 (70%), Gaps = 2/414 (0%)
Strand=Plus/Minus
Query 97033 AGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGA 97092
|| |||||| |||||| |||||||||||| ||||| |||||||| || ||||| |||
Sbjct 1543 AGTTGCTCTTTGAGAGGCTCAATGTGATTCGTGTAAATATGAGCATCACCAAAAGTATGA 1484
Query 97093 ATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAG 97152
| ||| || ||||| ||||| || ||||| || ||||| | || ||||||| ||
Sbjct 1483 ACAAAATCGCCAGGCTTTAAATTTGTAACATGAGCAATCATGTACGTCAATAGAGCGTAT 1424
Query 97153 CTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAG 97212
|| || |||||||| || || || |||||||||||||||||||| ||||| || ||
Sbjct 1423 GATGCGATATTAAAAGGAACTCCGAGACCCATATCAGCTGATCTTTGGTATAATTGGCAA 1364
Query 97213 GAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATT 97272
| || |||| ||||||||||| || |||||| || || | ||||||
Sbjct 1363 CTCAACTCGCCATTTGCGACATAAAACTGTACCAGACAATGACATGGTGGAAGTGCCATT 1304
Query 97273 TTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTG 97332
| ||||| ||| | |||||| |||| | | |||| || ||| |||| || |
Sbjct 1303 TGTGGAATATCCACTGGATTCCAGGCACTTAAAATAATTCGTCGATCATTTGGATTAGAT 1244
Query 97333 TGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCT-T 97391
| ||| | ||| | | ||||||||||||| |||| | |||| | || |
Sbjct 1243 TTAATGCGTTCAATAACATCTTTTAATTGATCAATTCCTTGTTTGTCATATTCATGATCG 1184
Query 97392 AAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCC 97445
| ||| ||||| || |||||||| | |||||| ||||||||||| || ||
Sbjct 1183 CATGTCTT-ATATTGGGCACCAAAATGACGCCATTGAAATCCATAAACTGGACC 1131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346658572236890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |