Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3947 181 7e-41 >seq3947 Length=2916 Score = 181 bits (200), Expect = 7e-41 Identities = 290/414 (70%), Gaps = 2/414 (0%) Strand=Plus/Minus Query 97033 AGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGA 97092 || |||||| |||||| |||||||||||| ||||| |||||||| || ||||| ||| Sbjct 1543 AGTTGCTCTTTGAGAGGCTCAATGTGATTCGTGTAAATATGAGCATCACCAAAAGTATGA 1484 Query 97093 ATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAG 97152 | ||| || ||||| ||||| || ||||| || ||||| | || ||||||| || Sbjct 1483 ACAAAATCGCCAGGCTTTAAATTTGTAACATGAGCAATCATGTACGTCAATAGAGCGTAT 1424 Query 97153 CTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAG 97212 || || |||||||| || || || |||||||||||||||||||| ||||| || || Sbjct 1423 GATGCGATATTAAAAGGAACTCCGAGACCCATATCAGCTGATCTTTGGTATAATTGGCAA 1364 Query 97213 GAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATT 97272 | || |||| ||||||||||| || |||||| || || | |||||| Sbjct 1363 CTCAACTCGCCATTTGCGACATAAAACTGTACCAGACAATGACATGGTGGAAGTGCCATT 1304 Query 97273 TTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTG 97332 | ||||| ||| | |||||| |||| | | |||| || ||| |||| || | Sbjct 1303 TGTGGAATATCCACTGGATTCCAGGCACTTAAAATAATTCGTCGATCATTTGGATTAGAT 1244 Query 97333 TGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCT-T 97391 | ||| | ||| | | ||||||||||||| |||| | |||| | || | Sbjct 1243 TTAATGCGTTCAATAACATCTTTTAATTGATCAATTCCTTGTTTGTCATATTCATGATCG 1184 Query 97392 AAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCC 97445 | ||| ||||| || |||||||| | |||||| ||||||||||| || || Sbjct 1183 CATGTCTT-ATATTGGGCACCAAAATGACGCCATTGAAATCCATAAACTGGACC 1131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346658572236890