Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq3947 212 9e-50
seq5242 201 2e-46
seq3668 131 3e-25
seq8363 116 6e-21
>seq3947
Length=2916
Score = 212 bits (234), Expect = 9e-50
Identities = 348/496 (70%), Gaps = 7/496 (1%)
Strand=Plus/Minus
Query 205312 ACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttttttt 205371
||||| | || ||||||| | ||| ||||| || | ||||| | ||| | |||
Sbjct 1591 ACTTGACGCTTGATTTTTAGCTGTGGGAATGGACGAGGGTTGCGTTCGAGTTGCTCTTTG 1532
Query 205372 AATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATAT 205431
| | ||| ||||| || ||||| |||| ||||| | |||||| ||| ||
Sbjct 1531 AGAGGCTCAATGTGATTCGTGTAAATATGAGCATCACCAAAAGTATGAACAAAATCGCCA 1472
Query 205432 GGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTA 205491
|| |||||||| || | ||| |||||||| || ||||||| | || || | ||||
Sbjct 1471 GGCTTTAAATTTGTAACATGAGCAATCATGTACGTCAATAGAGCGTATGATGCGATATTA 1412
Query 205492 AATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTA 205551
|| || || || | ||||||||||||||||||||| || | ||| || | | | |
Sbjct 1411 AAAGGAACTCCGAGACCCATATCAGCTGATCTTTGGTATAATTGGCAACTCA---ACTCG 1355
Query 205552 TTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACA 205611
||| |||| ||| ||||| | ||||||||| ||||| | |||| | | || |
Sbjct 1354 CCATTTGCGACATAAAACTGTACCAGACAATGACATGGTGGAAGTGCCATTTGTGGAATA 1295
Query 205612 TCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttatttta 205671
|| | ||||||||||| |||| || || || | | || ||| ||| ||
Sbjct 1294 TCCACTGGATTCCAGGCACTTAAAATAATTCGTCGATCATTTGGATTAGATTTAATGCGT 1235
Query 205672 tttatAATATGTGTTAATTGATCAAATCCTTGATTTGT-ATAATTTGTATC-CATATCAA 205729
| |||| || | |||||||||||| |||||| ||||| ||| | ||| ||| ||
Sbjct 1234 TCAATAACATCTTTTAATTGATCAATTCCTTG-TTTGTCATATTCATGATCGCATGTC-T 1177
Query 205730 TATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789
|||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1176 TATATTGGGCACCAAAATGACGCCATTGAAATCCATAAACTGGACCCAAATCACCCACTT 1117
Query 205790 TTCTATCATTAAAACC 205805
| |||||||||||
Sbjct 1116 GACGCTCATTAAAACC 1101
>seq5242
Length=62730
Score = 201 bits (222), Expect = 2e-46
Identities = 645/993 (65%), Gaps = 27/993 (3%)
Strand=Plus/Plus
Query 202858 CCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAA 202917
|||||| || |||||| | || |||||||| | |||||| | | | | |||||||||
Sbjct 10334 CCACATGCAGCCAACAAACCCGTTTGGATCTCTTCCATCAAGATTAAAACGATCATTTAA 10393
Query 202918 ATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGC 202977
|| | |||||||||| ||| ||||||||||| || ||||| ||
Sbjct 10394 ATAAATTGCTGTTTCAAGACCTTCTTCTGGCGATGCCGTCCATTCTAAAATCTTTTTTGC 10453
Query 202978 CCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGC 203037
||||||||||| ||| |||| |||||||| || | | ||||||| ||||||
Sbjct 10454 CCAATACATTCGCAAAAATCCGTGCATTTTGCCTTCCTTTGTCATTTGAATTTGTGCACT 10513
Query 203038 ATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTT 203097
||||||||||| ||||||||| || | ||||| | | |||| | || |
Sbjct 10514 ATTCCATAAATCATCATGAGTTTTAGCTTCTTCAAACTCTTTACGTGTATAAACATAATC 10573
Query 203098 TCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTAT 203157
|| | || || ||| ||||||| || || || ||||||| | || || |
Sbjct 10574 TCGTTTGTCTTTACGATGATCATTTAAAGTCTTCATGGCCCAATCTGTGATTCCTTTGAG 10633
Query 203158 ATTATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGC 203217
|||||||||||| ||| || | ||||| ||||||| |||||| |||| | ||||||
Sbjct 10634 ATTATCGTAATTGGGATTGTAGAAGCAAAAGTTATCACTAAGTTCTCTACGCACAATAGC 10693
Query 203218 TTCTTCACAAAAAACTTCTACCGATTTAGGATATAATTTTTTATATTTGTTAATTTCTAA 203277
|| |||||||| | || || || | | | | || ||||| || | ||| |
Sbjct 10694 CTCCTCACAAAACGCATCAACACTGGCAGAAGCTGAACTCTTGTATTTCTTTACTTCAAT 10753
Query 203278 TATTATTCTTTGAGTTGAAATTTGACCAAAATGTATCCATGGTGATAAATT--ACTTATT 203335
|| | ||| | ||||||||| |||| | | || || ||||| || |
Sbjct 10754 GATGGAGCGTTGCACAGCTATTTGACCATAATGGAAGTAAGGAGACAAATTTGACAAAAC 10813
Query 203336 GCATTAGCATTTGGATCATTTCtttttttagcataatcttttaatctattttgtataaat 203395
| | || | || |||||||| || | || | | ||||||||| || ||| |||
Sbjct 10814 ACTTAAG--GTCGGGTCATTTCTCTTGTCTCCAAAGTGTTTTAATCTTTTCATTATGAAT 10871
Query 203396 atatctaatattttaaatgcatattttGTA-CCAGATTTTGCCCAAGAAACAGGTTTAAC 203454
|| || ||| || | ||||||| |||| || ||| |||||||| ||
Sbjct 10872 -GATTCAAGCATTTCTATACTATTTTTGTATCCAGGCTTAATCCAGTCAACAGGTTCCAC 10930
Query 203455 ATTTCTATCAATATTTAATGATTGTTCTGCttttttccaat-tattatttat-------t 203506
| || ||||| |||||||||| | | || | ||| ||| | |
Sbjct 10931 AGACCTGTCAATTTTTAATGATTCTAAAATCTCTTCCGAATCAATTGGCTCTGGACGCAA 10990
Query 203507 ttaat-atatgtattataagtatgtttaataataggtataaattCAGTTAAATATTCTGA 203565
| ||| | || ||||||| ||||||||| | ||| ||||||||| ||||| |||
Sbjct 10991 TGAATCTTCTGGCTTATAAGGATGTTTAATTACTGGTGGAAATTCAGTCAAATAATCTCC 11050
Query 203566 TAATTTATAATTTATTTTATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGC 203625
| || ||| |||||||| | ||| || ||| | |||||| ||||| | |||
Sbjct 11051 GAGCTTGCTATTAATTTTATTACGAATTGTCCGTGCTGCATATTCCTGTTTATCAGAAGC 11110
Query 203626 AATCCAACATGGTACAATATTATGTGAATCAACTTG-ATAAACATCAATATTTAT----- 203679
|||||| ||| ||||||||||| | ||||||||| ||||| || | || ||
Sbjct 11111 AATCCATATTGGAACAATATTATGAGCATCAACTTGAATAAATGGCACTTTTGATGGCAA 11170
Query 203680 TTTACTAATAAGTTGATTTACCCAATTATTAAATATTTTAATAGGATAAAAATCAACAAT 203739
|| | ||| | | ||||| | | | || | | || ||||||| ||||
Sbjct 11171 TTCCTTCTTAATCTTTTCGACCCATTCACGATGGATCCTTAAGGGCGAAAAATC-ACAAA 11229
Query 203740 CAATA-CACCAATATTATAtttttttATAAATTTTGGTAATACATCTACTGATAT--TCC 203796
||| | ||||||| || | | ||| | ||||||||||| | | || || || | |||
Sbjct 11230 CAAGAGCACCAATTTTGAAGTCTTTAACAAATTTTGGTATTTC--CTTCTTATGTTCTCC 11287
Query 203797 TATCAATAGATGAAAATGTATATTTAAAttttt 203829
|| |||||||| |||| ||| |||| || ||
Sbjct 11288 AATTAATAGATGGAAATTAATACTTAATTTCTT 11320
>seq3668
Length=32275
Score = 131 bits (144), Expect = 3e-25
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || ||| |||| || ||||| || ||| | || |||| | |
Sbjct 30674 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCTTCT 30733
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | || || || ||||| |||||||| || ||||| ||||||
Sbjct 30734 GACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 30793
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | || || || || |||||||| || ||| | || ||||| || || |||
Sbjct 30794 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTACAAT 30853
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
|| ||||| |||||||| |||||||||||| | ||| | || ||||||||||
Sbjct 30854 ATCCAAAAGGAATCAACATTGCATTTGGTTCTTCGTCTTCGTGGTGGTATTA 30905
>seq8363
Length=52898
Score = 116 bits (128), Expect = 6e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
|||||||||||||||||||| || || || ||||||||| | | || ||||| || |||
Sbjct 26471 AAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAACGATTGATCTTTGCCGGTAAA 26412
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742
|||||||||||| | || ||||| || || |||||||| ||||| ||||| | ||
Sbjct 26411 CAATTAGAGGATGGACGCACATTGAGCGACTACAATATTCAGAAAGAGTCAACACTTCAC 26352
Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766
|| || || || | |||||||||
Sbjct 26351 TTAGTGTTGCGCCTTCGAGGTGGT 26328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755175754153600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |