Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3947 212 9e-50 seq5242 201 2e-46 seq3668 131 3e-25 seq8363 116 6e-21 >seq3947 Length=2916 Score = 212 bits (234), Expect = 9e-50 Identities = 348/496 (70%), Gaps = 7/496 (1%) Strand=Plus/Minus Query 205312 ACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttttttt 205371 ||||| | || ||||||| | ||| ||||| || | ||||| | ||| | ||| Sbjct 1591 ACTTGACGCTTGATTTTTAGCTGTGGGAATGGACGAGGGTTGCGTTCGAGTTGCTCTTTG 1532 Query 205372 AATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATAT 205431 | | ||| ||||| || ||||| |||| ||||| | |||||| ||| || Sbjct 1531 AGAGGCTCAATGTGATTCGTGTAAATATGAGCATCACCAAAAGTATGAACAAAATCGCCA 1472 Query 205432 GGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTA 205491 || |||||||| || | ||| |||||||| || ||||||| | || || | |||| Sbjct 1471 GGCTTTAAATTTGTAACATGAGCAATCATGTACGTCAATAGAGCGTATGATGCGATATTA 1412 Query 205492 AATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTA 205551 || || || || | ||||||||||||||||||||| || | ||| || | | | | Sbjct 1411 AAAGGAACTCCGAGACCCATATCAGCTGATCTTTGGTATAATTGGCAACTCA---ACTCG 1355 Query 205552 TTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACA 205611 ||| |||| ||| ||||| | ||||||||| ||||| | |||| | | || | Sbjct 1354 CCATTTGCGACATAAAACTGTACCAGACAATGACATGGTGGAAGTGCCATTTGTGGAATA 1295 Query 205612 TCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttatttta 205671 || | ||||||||||| |||| || || || | | || ||| ||| || Sbjct 1294 TCCACTGGATTCCAGGCACTTAAAATAATTCGTCGATCATTTGGATTAGATTTAATGCGT 1235 Query 205672 tttatAATATGTGTTAATTGATCAAATCCTTGATTTGT-ATAATTTGTATC-CATATCAA 205729 | |||| || | |||||||||||| |||||| ||||| ||| | ||| ||| || Sbjct 1234 TCAATAACATCTTTTAATTGATCAATTCCTTG-TTTGTCATATTCATGATCGCATGTC-T 1177 Query 205730 TATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789 |||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||| Sbjct 1176 TATATTGGGCACCAAAATGACGCCATTGAAATCCATAAACTGGACCCAAATCACCCACTT 1117 Query 205790 TTCTATCATTAAAACC 205805 | ||||||||||| Sbjct 1116 GACGCTCATTAAAACC 1101 >seq5242 Length=62730 Score = 201 bits (222), Expect = 2e-46 Identities = 645/993 (65%), Gaps = 27/993 (3%) Strand=Plus/Plus Query 202858 CCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAA 202917 |||||| || |||||| | || |||||||| | |||||| | | | | ||||||||| Sbjct 10334 CCACATGCAGCCAACAAACCCGTTTGGATCTCTTCCATCAAGATTAAAACGATCATTTAA 10393 Query 202918 ATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGC 202977 || | |||||||||| ||| ||||||||||| || ||||| || Sbjct 10394 ATAAATTGCTGTTTCAAGACCTTCTTCTGGCGATGCCGTCCATTCTAAAATCTTTTTTGC 10453 Query 202978 CCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGC 203037 ||||||||||| ||| |||| |||||||| || | | ||||||| |||||| Sbjct 10454 CCAATACATTCGCAAAAATCCGTGCATTTTGCCTTCCTTTGTCATTTGAATTTGTGCACT 10513 Query 203038 ATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTT 203097 ||||||||||| ||||||||| || | ||||| | | |||| | || | Sbjct 10514 ATTCCATAAATCATCATGAGTTTTAGCTTCTTCAAACTCTTTACGTGTATAAACATAATC 10573 Query 203098 TCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTAT 203157 || | || || ||| ||||||| || || || ||||||| | || || | Sbjct 10574 TCGTTTGTCTTTACGATGATCATTTAAAGTCTTCATGGCCCAATCTGTGATTCCTTTGAG 10633 Query 203158 ATTATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGC 203217 |||||||||||| ||| || | ||||| ||||||| |||||| |||| | |||||| Sbjct 10634 ATTATCGTAATTGGGATTGTAGAAGCAAAAGTTATCACTAAGTTCTCTACGCACAATAGC 10693 Query 203218 TTCTTCACAAAAAACTTCTACCGATTTAGGATATAATTTTTTATATTTGTTAATTTCTAA 203277 || |||||||| | || || || | | | | || ||||| || | ||| | Sbjct 10694 CTCCTCACAAAACGCATCAACACTGGCAGAAGCTGAACTCTTGTATTTCTTTACTTCAAT 10753 Query 203278 TATTATTCTTTGAGTTGAAATTTGACCAAAATGTATCCATGGTGATAAATT--ACTTATT 203335 || | ||| | ||||||||| |||| | | || || ||||| || | Sbjct 10754 GATGGAGCGTTGCACAGCTATTTGACCATAATGGAAGTAAGGAGACAAATTTGACAAAAC 10813 Query 203336 GCATTAGCATTTGGATCATTTCtttttttagcataatcttttaatctattttgtataaat 203395 | | || | || |||||||| || | || | | ||||||||| || ||| ||| Sbjct 10814 ACTTAAG--GTCGGGTCATTTCTCTTGTCTCCAAAGTGTTTTAATCTTTTCATTATGAAT 10871 Query 203396 atatctaatattttaaatgcatattttGTA-CCAGATTTTGCCCAAGAAACAGGTTTAAC 203454 || || ||| || | ||||||| |||| || ||| |||||||| || Sbjct 10872 -GATTCAAGCATTTCTATACTATTTTTGTATCCAGGCTTAATCCAGTCAACAGGTTCCAC 10930 Query 203455 ATTTCTATCAATATTTAATGATTGTTCTGCttttttccaat-tattatttat-------t 203506 | || ||||| |||||||||| | | || | ||| ||| | | Sbjct 10931 AGACCTGTCAATTTTTAATGATTCTAAAATCTCTTCCGAATCAATTGGCTCTGGACGCAA 10990 Query 203507 ttaat-atatgtattataagtatgtttaataataggtataaattCAGTTAAATATTCTGA 203565 | ||| | || ||||||| ||||||||| | ||| ||||||||| ||||| ||| Sbjct 10991 TGAATCTTCTGGCTTATAAGGATGTTTAATTACTGGTGGAAATTCAGTCAAATAATCTCC 11050 Query 203566 TAATTTATAATTTATTTTATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGC 203625 | || ||| |||||||| | ||| || ||| | |||||| ||||| | ||| Sbjct 11051 GAGCTTGCTATTAATTTTATTACGAATTGTCCGTGCTGCATATTCCTGTTTATCAGAAGC 11110 Query 203626 AATCCAACATGGTACAATATTATGTGAATCAACTTG-ATAAACATCAATATTTAT----- 203679 |||||| ||| ||||||||||| | ||||||||| ||||| || | || || Sbjct 11111 AATCCATATTGGAACAATATTATGAGCATCAACTTGAATAAATGGCACTTTTGATGGCAA 11170 Query 203680 TTTACTAATAAGTTGATTTACCCAATTATTAAATATTTTAATAGGATAAAAATCAACAAT 203739 || | ||| | | ||||| | | | || | | || ||||||| |||| Sbjct 11171 TTCCTTCTTAATCTTTTCGACCCATTCACGATGGATCCTTAAGGGCGAAAAATC-ACAAA 11229 Query 203740 CAATA-CACCAATATTATAtttttttATAAATTTTGGTAATACATCTACTGATAT--TCC 203796 ||| | ||||||| || | | ||| | ||||||||||| | | || || || | ||| Sbjct 11230 CAAGAGCACCAATTTTGAAGTCTTTAACAAATTTTGGTATTTC--CTTCTTATGTTCTCC 11287 Query 203797 TATCAATAGATGAAAATGTATATTTAAAttttt 203829 || |||||||| |||| ||| |||| || || Sbjct 11288 AATTAATAGATGGAAATTAATACTTAATTTCTT 11320 >seq3668 Length=32275 Score = 131 bits (144), Expect = 3e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| |||| || ||||| || ||| | || |||| | | Sbjct 30674 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCCTTCT 30733 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || ||||| |||||||| || ||||| |||||| Sbjct 30734 GACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 30793 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || |||||||| || ||| | || ||||| || || ||| Sbjct 30794 CAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTACAAT 30853 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || ||||| |||||||| |||||||||||| | ||| | || |||||||||| Sbjct 30854 ATCCAAAAGGAATCAACATTGCATTTGGTTCTTCGTCTTCGTGGTGGTATTA 30905 >seq8363 Length=52898 Score = 116 bits (128), Expect = 6e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||||||||||||||| || || || ||||||||| | | || ||||| || ||| Sbjct 26471 AAAATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAACGATTGATCTTTGCCGGTAAA 26412 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||||||| | || ||||| || || |||||||| ||||| ||||| | || Sbjct 26411 CAATTAGAGGATGGACGCACATTGAGCGACTACAATATTCAGAAAGAGTCAACACTTCAC 26352 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 || || || || | ||||||||| Sbjct 26351 TTAGTGTTGCGCCTTCGAGGTGGT 26328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755175754153600