Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq5242 86.0 1e-11 >seq5242 Length=62730 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 189356 TGGGCCAGAAAAACATTAGAAGATCACATTAATGATCCTAGAAAGTATATATATTCCATT 189415 ||||||| || || ||| | ||||| ||| || || | ||| | ||| | | Sbjct 10615 TGGGCCATGAAGACTTTAAATGATCATCGTAAAGACAAACGAGATTATGTTTATACACGT 10556 Query 189416 AAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATG 189475 ||| | | ||| |||| ||||||||||| | ||||||| ||||||| || ||| Sbjct 10555 AAAGAGTTTGAAGAAGCTAAAACTCATGATGATTTATGGAATAGTGCACAAATTCAAATG 10496 Query 189476 GTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAA 189535 | ||||| |||||||| | ||||| |||||||||||||| || ||||| | ||| Sbjct 10495 ACAAAGGAAGGCAAAATGCACGGATTTTTGCGAATGTATTGGGCAAAAAAGATTTTAGAA 10436 Query 189536 TGGAC 189540 ||||| Sbjct 10435 TGGAC 10431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922854328607080