Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq12008 122 1e-22 seq8363 89.7 8e-13 >seq12008 Length=33819 Score = 122 bits (134), Expect = 1e-22 Identities = 187/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 10361 AAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAAT 10420 |||||||||||||| |||||| | || | || || || | ||||| || | Sbjct 14946 AAGTGCATATGATTGCATTGTTCCTGCTCGTGGAAAGTTTGTAGTCAAAACAGACATCCA 14887 Query 10421 TATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAA 10480 |||||| |||| |||| || |||| | || | || || | || | ||||| | || Sbjct 14886 AATAGAACTTCCAGAAGGGTGCTATGGACGAATTGCACCTCGTTCAGGATTAGCAGTTAA 14827 Query 10481 TAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGT 10540 || |||||||| |||| || ||||| | || ||||||||||||||||| |||| || Sbjct 14826 AAACTTTATTGACGTTGGTGCAGGAGTTGTCGATGAAGATTATAGAGGAAACTTGGGTGT 14767 Query 10541 AATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCA 10600 | | | |||||||| || ||| ||||||| || | ||| ||| | || |||| Sbjct 14766 AGTCATGTTTAATCACTCAGATGTCGATTTTACTATTGCCAAAGGCGATCGTATTGCTCA 14707 Query 10601 ATTAATATGTGAAAAAATTTTATATCC 10627 |||||| |||||| ||| || ||||| Sbjct 14706 ATTAATCTGTGAACGAATCTTTTATCC 14680 >seq8363 Length=52898 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| ||| | || || || || | || || ||||| ||||| || || Sbjct 26329 CCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTC 26388 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| || ||||| ||||||| ||| ||||| |||||| Sbjct 26389 AATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGA 26448 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 26449 ATTCCTTCTTTATCTTG 26465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743250579587840