Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9081 282 4e-71 >seq9081 Length=2203 Score = 282 bits (312), Expect = 4e-71 Identities = 563/819 (69%), Gaps = 14/819 (2%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||||||||| | ||| | ||||||||| || || || || || | |||||| | Sbjct 48 TTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAAT 107 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 |||||||| || |||||||| | | |||| || || ||||||||| ||| Sbjct 108 TCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAAT 167 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 || ||| || || ||||| || || | |||||||||||| ||||| || | | Sbjct 168 AAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATC 227 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 || || || | ||| || || ||||| | ||||| || || || || || |||| || Sbjct 228 TTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAATT 287 Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTT--AATAAG-TGTTTAAACATTATACAAGCA 16240 || ||| | | ||| || || || |||||| ||||| |||||| || ||| Sbjct 288 TCAACAACT-CGTTCTTTT--GGTGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCA 344 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 || |||| ||| | ||||||||| || || | || ||||| ||||| | ||||||| Sbjct 345 AAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGC 404 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 |||| ||| || || ||||||||||| || || ||||| ||| |||||| || || Sbjct 405 ATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCC 464 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420 || || || ||||| |||| | ||| ||||| | || || ||||| |||||| Sbjct 465 TCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAA 524 Query 16421 tttttagcccaatttgctttttgtttAACACA-GTTCATGTTCTCTATTGCATTAAATAA 16479 ||| ||||| | ||| |||| || || || | | | | |||| || ||||| ||||| Sbjct 525 TTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAG-TCTCAATAGCATTGAATAA 583 Query 16480 ATAAt-ttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTA-TACATTTCT 16537 | | | |||||| ||| |||||||| || ||||| || | | ||||| ||| Sbjct 584 GAAGTCACGCTGCTTTGC-ATCACGGATATAAGTTTCAATTAG-AATCGAGTACATCTCT 641 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597 || || | ||| ||||| || || || || ||||||||| ||| |||||| | || ||| Sbjct 642 GAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGA 701 Query 16598 ACTT-CAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 |||| | || | || | ||| |||||| || || || || || || || ||||| Sbjct 702 ACTTCCTGACT-GAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAA 760 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGA 16716 || || | || |||| ||||| | ||| ||| | |||| ||||||| Sbjct 761 GAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACT 820 Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAA 16755 | |||||||||||||||||| ||||| || ||||| || Sbjct 821 CATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462340425392200