Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3947 242 3e-59 >seq3947 Length=2916 Score = 242 bits (268), Expect = 3e-59 Identities = 420/600 (70%), Gaps = 14/600 (2%) Strand=Plus/Plus Query 20039 ATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTAT 20098 || ||||||| || || || || ||||| ||||||||| ||| || | ||| ||| | | Sbjct 943 ATCAATTTCCATTGTTGACAACCAAACGAGTATTTTGGCGAGGAGTCGCTGAGGAGCTTT 1002 Query 20099 TATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGA-TT 20157 ||||||| || ||||| || ||| || ||| |||| || || | | || || || Sbjct 1003 TATGGTTCATAAAAGGTTCCACAGATGCTAAATTGCTTCAAGCGAA-GAATATACGAATT 1061 Query 20158 TGGAGCGCACATGGATCTAAGC---AATTTTTACACAGCAAT-GGATTTGACAACCGTCA 20213 ||| || | | | || || |||| | | ||| || ||| | | ||||| Sbjct 1062 TGGGACGGAAACAG---TACGCGTGAATTCCTCGAT-GCATCCGGTTTTAATGAGCGTCA 1117 Query 20214 AGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGT 20273 || ||| ||||||||||| || ||||||||||||||| | |||||||| || ||||| Sbjct 1118 AGTGGGTGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCCCAATATAA 1177 Query 20274 TGACATG--AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAAT 20331 |||||| | || ||| || ||||||| | ||||||||| || |||||||| | Sbjct 1178 -GACATGCGATCATGAAT-ATGACAAACAAGGAATTGATCAATTAAAAGATGTTATTGAA 1235 Query 20332 TTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGAT 20391 |||||| | || ||||| || || ||||||||||| | |||||||| | ||| Sbjct 1236 CGCATTAAATCTAATCCAAATGATCGACGAATTATTTTAAGTGCCTGGAATCCAGTGGAT 1295 Query 20392 GTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAAT 20451 | || |||||| | || ||||||||| || || ||||| || || ||| Sbjct 1296 ATTCCACAAATGGCACTTCCACCATGTCATTGTCTGGTACAGTTTTATGTCGCAAATGGC 1355 Query 20452 GAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAAT 20511 || ||| || ||| | || ||| |||| ||||||||||| || || |||||||| ||| Sbjct 1356 GAGTTGAGTTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGGAGTTCCTTTTAAT 1415 Query 20512 ATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGT 20571 || ||| || || || | ||||| |||||||| ||||||||| ||||||| | || Sbjct 1416 ATCGCATCATACGCTCTATTGACGTACATGATTGCTCATGTTACAAATTTAAAGCCTGGC 1475 Query 20572 GACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAA 20631 || || || || || | || || || ||||||||| ||||| || || ||| | ||| Sbjct 1476 GATTTTGTTCATACTTTTGGTGATGCTCATATTTACACGAATCACATTGAGCCTCTCAAA 1535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399039619762765