Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq9081 306 4e-78 >seq9081 Length=2203 Score = 306 bits (338), Expect = 4e-78 Identities = 570/829 (69%), Gaps = 10/829 (1%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||||||||| | ||| || ||||||||||||||| || || || ||||| || | Sbjct 48 TTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAAT 107 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 |||||||| ||||||||| | | || | || || ||| || | ||| || | Sbjct 108 TCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAAT 167 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 || ||| || | ||| ||||| |||| ||||||||||||||||||||| || | | Sbjct 168 AAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATC 227 Query 14093 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 14152 ||||| |||| | | || |||||||| ||||| || |||||||| | ||||| Sbjct 228 TTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAATT 287 Query 14153 ATCGTAATAATT---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209 || || || | || || | || | | |||||||| | ||||| || ||| Sbjct 288 -TC--AACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCA 344 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 || |||| |||||| || || ||||| ||||||||| ||||| ||||| || |||||| Sbjct 345 AAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGC 404 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 || ||||| || || || | |||||| ||||| || || ||| |||||| || ||| Sbjct 405 ATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCC 464 Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14389 || || |||||||| || || | |||||| ||||| ||| | || | |||||||| Sbjct 465 TCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAA 524 Query 14390 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 ||| ||||| || | ||||| || | | | || ||||||||||| ||||| Sbjct 525 TTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGAATAAG 584 Query 14450 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATTTCAGA 14508 || || || | | || || || ||||| || || | | ||||| || || Sbjct 585 AAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAG-AATCGAGTACATCTCTGA 643 Query 14509 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14568 ||||| ||||||||||| || || || |||||||| ||| |||||||| ||| || Sbjct 644 GTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAAC 703 Query 14569 CT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14627 | |||| | |||| ||| || || ||||| || || || || || ||||| | Sbjct 704 TTCCTGACT-GAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGA 762 Query 14628 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTA 14687 |||| |||| || | ||||||| | ||| || | | ||||| ||| || | Sbjct 763 ATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTCA 822 Query 14688 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 ||| || || | ||| ||||| || |||||||| || || || |||| Sbjct 823 TATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTTCAGC 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482166667870360