Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq3947 138 2e-27 seq29512 113 6e-20 >seq3947 Length=2916 Score = 138 bits (152), Expect = 2e-27 Identities = 297/448 (66%), Gaps = 36/448 (8%) Strand=Plus/Plus Query 104403 TGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGGTGAAAATTATATTGGGTG 104462 |||||| || || ||||||| ||||| ||| | |||| ||||| | |||| || Sbjct 1124 TGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCCCAATATAAGACATG 1183 Query 104463 CGATAATAAATATGGT------GGTATAGATCAACTCAAAAATATTATTACAACAATTCA 104516 |||| || |||||| || || |||||| | ||| || ||||| | ||| | Sbjct 1184 CGATCATGAATATGACAAACAAGGAATTGATCAATTAAAAGATGTTATTGAACGCATTAA 1243 Query 104517 AAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTAA 104576 | | | || ||| || |||| || ||| || ||||| ||| ||||| | | | Sbjct 1244 ATCTAATCCAAATGATCGACGAATTATTTTAAGTGCCTGGAATCCAGTGGATATTCCACA 1303 Query 104577 AATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAATGG 104636 |||||||||||| || ||||||||| | | ||| ||| ||| || |||| Sbjct 1304 AATGGCACTTCCACCATGTCATTGTCTGGTACAGTTTTATG-----TCGCAAAT------ 1352 Query 104637 TAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTTCC 104696 | || ||| ||| || |||| |||||||| || |||||||| | |||||||| Sbjct 1353 ----GGCGAGTTGAGTTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGGAGTTCC 1408 Query 104697 TTTTAACATAGCAAGTTATGCATTATTAACACATATAATAGCTCATGTCTCATCAACCAA 104756 |||||| || ||| || || |||| || | || || |||||||| Sbjct 1409 TTTTAATATCGCATCATACGCTCTATTGACGTACATGATTGCTCATGT------------ 1456 Query 104757 TACAGAATTAATTGTTCCTGGAGATTTTGTTCACACATTAAGTAATGTTCATATTTATAA 104816 |||| | |||| ||||| ||||||||||| || || || ||| ||||||||| | Sbjct 1457 TACAAATTTAA---AGCCTGGCGATTTTGTTCATACTTTTGGTGATGCTCATATTTACAC 1513 Query 104817 AAATCATATTAAAGCTCTTACAGAACAA 104844 ||||| ||| | |||| | ||| ||| Sbjct 1514 GAATCACATTGAGCCTCTCAAAGAGCAA 1541 >seq29512 Length=4374 Score = 113 bits (124), Expect = 6e-20 Identities = 200/289 (69%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 35839 CGTAATTTTGTAAAAATATCTATATTTAATT---TGGCTGCTTCATCTGATTCAAATGAT 35895 |||| || | |||| || | | |||| |||| | |||| || || |||||||| | Sbjct 3061 CGTATTTGTTTAAATATTTGTTTATTCAATTGTTTTGCTG-TTAAT--GATTCAAAAGGA 3005 Query 35896 ATAtttttttGTTGAAGAAAAGAATGAAAACCCAAAACACCAATTCCTATACTTCTTTCC 35955 || |||| ||| | || |||||||| |||| ||||||| || || || | || Sbjct 3004 ATCATTTTGCTTTGTAAAAGTGAATGAAATCCCATTACACCAAGGCCAATGCTACGCTCT 2945 Query 35956 TTTTTTGCCGAGTTCACCGCACGAGATATAGTTGGAGGTGCCTTTTCTATAAAAATTGTT 36015 | |||| |||| ||||| ||| ||| || || | ||||||| | | Sbjct 2944 CTCATTGCGGAGTATTTTGCACGTTTTATTTCATTAGGAGCTTTATTTATAAAATCTTCT 2885 Query 36016 AAAGCATTATCCAACATTTCCATTACATCTTTTATAAAAAGATCGTTATCTTTCCATTCA 36075 | | ||||||| | | ||||| ||||| ||||||||| || ||| |||||||||| Sbjct 2884 AGAACATTATCGAGAAAACACATTATATCTTCTATAAAAAGCTCATTACCTTTCCATTCT 2825 Query 36076 TCATAATATTCTAAATTTAAAGAAGATAAACAACAGACAGCTGTTCGTG 36124 |||||||| || | |||||| || ||||||||||| || || || |||| Sbjct 2824 TCATAATACTCAAGATTTAATGATGATAAACAACATACGGCAGTACGTG 2776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679562214350640