Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3668 104 2e-17 seq8363 102 6e-17 >seq3668 Length=32275 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| || | ||||||||| ||||| || |||||||| | Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||||||||||| || || |||| | | ||||||||| || Sbjct 30840 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGA 30781 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || || | | |||||| | | | | ||||||| ||||| | Sbjct 30780 ATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACT 30721 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | |||||| |||| || || |||||||| || || |||||||| || Sbjct 30720 TCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATCTT 30671 >seq8363 Length=52898 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||||||||| ||||| ||||| ||||||||| || ||| | ||| || ||||| Sbjct 26352 GTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCTAATTG 26411 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| |||| | || ||||||||| || | ||||| ||||| ||||| Sbjct 26412 TTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATTTT 26471 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||||| |||||| ||| | ||| || | || || || Sbjct 26472 AGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGT 26531 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||| || || || ||||| Sbjct 26532 CAAGGTTTTGACGAAGATCTGCAT 26555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379206795661365