Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9081 235 5e-57 seq5596 235 5e-57 >seq9081 Length=2203 Score = 235 bits (260), Expect = 5e-57 Identities = 559/837 (67%), Gaps = 22/837 (3%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| |||||| || ||||| ||||||||||| || | || || ||| |||| || | Sbjct 873 AGGCTGAAGCAAGCTTCTGGACAGTCGAAGAAGTCGATTTATCAAAAGATATGAGTGACT 814 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 |||| | || || || || | | ||||| |||||| || || || || || | Sbjct 813 GGGAAAAATTAAAGGATTCAGAACGTCACTTTATCTCACACGTATTAGCATTCTTTGCTG 754 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 |||| || || ||||| || ||||| || | ||| |||| || ||||| ||||| | Sbjct 753 CATCAGACGGCATTGTAAATGAGAACTTAATTGAACGATTCAGTCAGGAAGTTCAAGTAA 694 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 | || || ||| |||||| ||||| ||| | || || ||||| || || ||||| |||| Sbjct 693 CAGAAGCTCGATTCTTTTATGGATTCCAAATTGCTATGGAAAATGTACACTCAGAGATGT 634 Query 57829 ATTCGCTACTCATCGATACGTA----CGTGAAGGACAACGACGAGAAACGTAGACTG--- 57881 | ||| | || || || || || ||||| | ||| || | ||| |||| Sbjct 633 ACTCGATTCTAATTGAAACTTATATCCGTGATG--CAA-----AGCAGCGT-GACTTCTT 582 Query 57882 -TTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAAT 57939 ||||| || || || || | || ||| | || |||||||| ||| | | || | Sbjct 581 ATTCAATGCTATTGAGACTTTACCGTGCG-TAAAGAAAAAGGCAGACTGGGCCTTAAATT 523 Query 57940 GGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAG 57999 ||||| || || | || | || | | || || || || || ||||| | Sbjct 522 GGATATCCAGTAAGCATGCAAACTTTGGTGAACGAGTTATTGCCTTTGCTGCTGTCGAGG 463 Query 58000 GTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGC 58059 | || |||||| || |||||||| ||||| |||||||| ||||| || || | |||| Sbjct 462 GGATTTTCTTTAGTGGAAGCTTTGCAGCAATCTTTTGGATTAAGAAGCGTGGATTAATGC 403 Query 58060 CCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTG 58119 | || |||| || || || | || ||| | ||||| || || ||| ||| |||| Sbjct 402 CAGGTTTGACATTCTCAAATGAACTTATTTCGAGAGACGAAGGACTTCATCGTGACTTTG 343 Query 58120 CGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTA 58179 | ||| |||||||| || || | | || || | || || | | || |||| Sbjct 342 CATGCTTAATGTACAAACATCTTATTCAGAAGCCACCAAAAGAACGAGTTGTTGAAATTA 283 Query 58180 TCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC 58239 |||| ||||| || ||| ||||| || ||| | || || || || || || ||| Sbjct 282 TCACAGAGGCTGTAAAGATTGAAAAGGAATTTTTGACTGACGCACTTCCAGTAAAGATGT 223 Query 58240 TCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGC 58299 | || ||||| |||||| ||||| | |||||||| || || ||||| | || Sbjct 222 TGGGCATGAATTGTGATTTAATGTCTGAATACATTGAATTCGTAGCCGATCATTTATTAG 163 Query 58300 TCGAACTG--ATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCT 58357 |||| || | | || | ||| || || || |||||||| || |||||| | | Sbjct 162 GCGAATTGGGACTTGACAAGGTC--TATAATACCAAAAATCCATTCTCATTTATGGAATT 105 Query 58358 GATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 || || || ||||||||||| ||||| || ||| ||| ||| ||||||||||||| Sbjct 104 AATTTCACTTGAGGGCAAGACTAACTTCTTTGAACGAAAGGTTGGCGAATATCAAAA 48 >seq5596 Length=16775 Score = 235 bits (260), Expect = 5e-57 Identities = 1086/1704 (64%), Gaps = 44/1704 (3%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || || ||||| || || || || || || | ||| || | | |||||||| || Sbjct 11250 TTATCAACAGTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCA 11309 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG- 22224 || || || |||| |||||| | |||||||| || || |||||||| |||||| | || Sbjct 11310 GTTTTAAGTCCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGT 11369 Query 22225 -CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | | |||| | | ||||| || ||||| ||||||||||| ||||| ||||| || | Sbjct 11370 TCCGCTACATGAATA--TTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTG 11427 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | || ||| | || ||||||||||| || || || | | | || | Sbjct 11428 CCATTTGAATTTGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATAT 11487 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || || || || | || || ||||| || || ||| || | Sbjct 11488 CATCAGGAATTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCA 11547 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | ||| | ||| ||||| | |||||||| || | |||||| | || || |||| Sbjct 11548 TGTCATCATCCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTT 11607 Query 22464 GAAACTCGCCGGAC-AAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 ||||||| || || ||| || || || | |||| || |||| ||||||| ||| Sbjct 11608 GAAACTCTCC--ACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACT 11665 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 ||||| || || | |||||||| || || || || ||||| || || || | | || Sbjct 11666 CTCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGA 11725 Query 22582 GTTTCTCAAGCCGTGCTT-TGAAATTTTACTCTTGA-GCATCGACCAGTCCCACAGATCG 22639 || | | || || | | |||| || || | || || ||| ||||||| || Sbjct 11726 ATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTC--CCAATCCCACAAGTCA 11783 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC----GCGACTCGCCGGGCT 22695 | || ||| || ||||||||||| ||||| || | || | ||| || | Sbjct 11784 GTTGGTGTC---TTTTCCCACATATCATATTGTAATATACCTTTTGATACT----GGACA 11836 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGC 22755 ||||| ||||| || || | ||| | | | || | ||| ||||||| ||| || || Sbjct 11837 TCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGC 11896 Query 22756 GCCGTAATATATAGTCTCGAAGATTTTCTTGTT---CAATTCGGCGGCGGC-GACGCTTT 22811 || ||||| || ||||| || |||| | || |||| || | | ||| | Sbjct 11897 TCCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGAC----T 11952 Query 22812 CGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 |||| ||||| | ||||| | || || || || | || |||| || || ||||| | Sbjct 11953 CGTATGGCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTG 12012 Query 22872 GTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTG 22931 | || | | | | || || ||| || || | ||||| |||| || || Sbjct 12013 GACGATGTCTAAAGTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAA 12072 Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991 || | || || ||||| || || || || || | | || || || Sbjct 12073 TTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTTCAATTTATGGAAATCATATT 12132 Query 22992 C-GCCCGATT--GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCA 23048 | ||||| | |||||| | || | ||| || || || | ||| || || || | Sbjct 12133 CTTTACGATTTGGCTTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAA 12192 Query 23049 CCTCGTCTTTGGACGTG--TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 | || ||||| || || || | |||||||| ||||||| ||| || || || Sbjct 12193 CTTCATCTTT--ACTTGAATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGT 12250 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 || | ||| || || ||| ||||| || | |||||| || ||||| || || || Sbjct 12251 TCCAAGATTCTGTTGATTCGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGT 12310 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226 || ||||| || || || || || || || ||| | | || || | || | || Sbjct 12311 TCCTGTCTCAACTTGAGATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACG 12370 Query 23227 CACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACA 23286 | | | |||||| | || || || | |||||||| ||| ||| Sbjct 12371 AATAAATCGTCCTTCTGCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGT 12430 Query 23287 GTCGGCCAGGCCGGGCGATTGC-AT-CGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 || || || | || || || |||||||| | | ||||||| | |||||| Sbjct 12431 CTCATAAAGACCTG--GACAGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCA 12488 Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || ||| |||||| | || || ||||||| ||| || |||| || | || || || Sbjct 12489 ACACGTTGCATAAACAAGTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACT 12548 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 || ||||| || || || || || ||||| | ||| || || || || ||||||| || Sbjct 12549 TCTTCTTTTCCAGTATTTTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGT 12608 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 || | || || ||||| || || || | ||||| || || ||||| || ||||| || Sbjct 12609 TCCAAATAGACTGCAAATGCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCT 12668 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584 || || ||||| ||||| | ||| || |||||||| || || || | || || Sbjct 12669 GTATTATTGTAAACTCTCAACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCT 12728 Query 23585 ACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | | | ||||||| |||| ||||| | | || || || || | ||||| Sbjct 12729 ATATATGTCCCTTTTGAACGAATACAATGAACATTAACGCCAATTCCACCTGCTGATTTG 12788 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || | ||||||||| || | |||||| || || |||||||| ||| || | Sbjct 12789 CTAATTAGCGCGCATTGCTTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATT 12848 Query 23705 GCGACCAAGAAA-CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763 | || |||||| || ||||||| ||| | || ||||| || | ||| ||||| || Sbjct 12849 GAGA-GAAGAAAGCATGAAGACAATTGAGGACGTGGTGTAGCTGCTGCGAAAAGTGTTGG 12907 Query 23764 GCTGGCGTGCGTAAAGTATCCATT 23787 || || || ||| ||| ||| Sbjct 12908 TGATGCATGTGTGAAGAATCTATT 12931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445601037381840