Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq9081 192 1e-43 >seq9081 Length=2203 Score = 192 bits (212), Expect = 1e-43 Identities = 348/505 (69%), Gaps = 8/505 (2%) Strand=Plus/Minus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATG--CA--AAGCAATAACGATTTGGCGGA 101910 ||||| |||| | ||||| | |||||||| || ||||| | ||||| | | Sbjct 550 AAGAAAAAGGCAGACTGGGCCTTAAATTGGATATCCAGTAAGCATGCAAACTTTGGTG-A 492 Query 101911 ACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCAT 101970 || | || ||||||||||||| || || || || ||||||||||| || ||| | || Sbjct 491 ACGAGTTATTGCCTTTGCTGCTGTCGAGGGGATTTTCTTTAGTGGAAGCTTTGCAGCAAT 432 Query 101971 TTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTC 102030 || ||||| ||||| | || | |||| ||| | || | ||| ||||| | ||||| Sbjct 431 CTTTTGGATTAAGAAGCGTGGATTAATGCCAGGTTTGACATTCTCAAATGAACTTATTTC 372 Query 102031 TAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA 102090 || |||||||| |||||||| |||||||||||| | ||| ||| | | || || | Sbjct 371 GAGAGACGAAGGACTTCATCGTGACTTTGCATGCTTAATGTACAAACA---TCTTATTCA 315 Query 102091 TACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGA 102150 | ||| ||| |||| | || |||||||| |||| || || || |||||| | || Sbjct 314 GAAGCCACCAAAAGAACGAGTTGTTGAAATTATCACAGAGGCTGTAAAGATTGAAAAGGA 255 Query 102151 ATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCA 102210 |||| | || | | || || || || | |||| ||||| || | || ||| | Sbjct 254 ATTTTTGACTGACGCACTTCCAGTAAAGATGTTGGGCATGAATTGTGATTTAATGTCTGA 195 Query 102211 GTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAA 102270 ||||||||||| || || ||| | |||| | ||| ||||||| || ||| |||||| Sbjct 194 ATACATTGAATTCGTAGCCGATCATTTATTAGGCGAATTGGGACTTGACAAGGTCTATAA 135 Query 102271 TGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330 | | || || ||| |||| ||||| ||||| || ||| ||||| ||||| || Sbjct 134 TACCAAAAATCCATTCTCATTTATGGAATTAATTTCACTTGAGGGCAAGACTAACTTCTT 75 Query 102331 TGAAAAGAGAGTCGCCGAGTATCAA 102355 |||| | || | ||| |||||| Sbjct 74 TGAACGAAAGGTTGGCGAATATCAA 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989207723981535