Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5596 448 6e-121 seq9081 230 3e-55 >seq5596 Length=16775 Score = 448 bits (496), Expect = 6e-121 Identities = 1087/1635 (66%), Gaps = 35/1635 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 || |||||||| | | | || | ||| || | || || |||||||| ||||| || Sbjct 11259 GTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTTTTAAGT 11318 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | ||||||| |||||||| ||| || | ||| |||| | || || |||| | Sbjct 11319 CCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCCGCTACA 11378 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || ||||| | ||||||||||||||||| || ||||| | || || ||||||| || Sbjct 11379 TGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCATTTGAATT 11438 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 ||||| | |||||||| | |||||||||| |||||||| || |||| Sbjct 11439 TGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCATCAGGAA-- 11496 Query 62286 TTTG-----TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 62340 ||| || || || || ||| || | | ||||| |||||| || ||||||| Sbjct 11497 TTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCATGTCATCAT 11556 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 |||||| | || || ||| | ||| ||||| | ||||| ||||| || |||| Sbjct 11557 CCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTTGAAACTCTC 11616 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 || | || | ||| | |||| |||||| || |||||||| | ||||||||| | Sbjct 11617 CACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCTCATTATTAC 11676 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 | ||||| ||||| ||||||||||| ||||| ||||| | || || ||| | ||||| Sbjct 11677 CTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAATTACGAAGAC 11736 Query 62521 CGTATGTTCTGATTTTATCTTTTAGATG-TTCCCAATTCCAAAGATCCGACGGTACAACA 62579 | | | ||||||| ||||||| ||| |||||||| ||| | || | ||| Sbjct 11737 CAAAATTCTTGATTTTTTCTTTTA-ATGCTTCCCAATCCCACAAGTCAGTTGGTGTCTTT 11795 Query 62580 NNNNNNNNNNNATATTGTAGAATACC----GTTACTGGCGTACGATCCTACATATGTATC 62635 |||||||| ||||| | |||||| || ||||| |||| || || Sbjct 11796 TCCCACATATCATATTGTAATATACCTTTTGATACTGG---AC-ATCCTTCATACGTCTC 11851 Query 62636 ATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGT 62695 ||| | ||| || ||||| | || ||| |||| |||||| || || |||||||| || Sbjct 11852 ATAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATAAATTGT 11911 Query 62696 TTCAAAGATCTTCTTATTTAGATCTTGTGCTTC--CGGGCTATCAAATGGATAATTTAAG 62753 ||||| || | | ||||| || ||||| | | | || |||| | | Sbjct 11912 CTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGAC--TCGTATGGCATTCTCATC 11969 Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62813 | ||||| || || ||||||||||||| ||||| ||||| || | |||||| || Sbjct 11970 AATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAAAGTTT 12029 Query 62814 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC-- 62871 || || ||||||| || ||||| |||||| || ||||||||||| | ||||| Sbjct 12030 GATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAATTTCTT 12089 Query 62872 -TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCT--- 62924 |||| || ||||| || ||||||| ||| | |||||| | | | || | Sbjct 12090 GTGACTAT--CTTTG-TGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATTTGGC 12146 Query 62925 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 | |||||||| || || |||| ||||| | |||||| || || || |||| | Sbjct 12147 TTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTTACTT 12206 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | |||||| | || ||||| || | ||| || ||| ||||| | ||| |||||| Sbjct 12207 GAATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGA 12266 Query 63045 TTACTCTTTTTG-TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103 || | ||| | ||||| ||||||||||| || || | || || || || |||| || Sbjct 12267 TT-CGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAACTTG 12325 Query 63104 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC 63163 |||||| ||||| || ||| | || | ||||||| | | | ||| | ||| Sbjct 12326 AGATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTCCTTC 12385 Query 63164 TCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223 | ||| ||| || |||| | ||| || || | || || | | | | || Sbjct 12386 TGCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGACCTGG 12445 Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63283 ||| || |||||||| || |||||| | | | | | || |||| |||||| | Sbjct 12446 ACAGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAACAA 12505 Query 63284 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343 ||||||||||| | ||| ||| | |||||| | | | ||| || ||||| ||||| Sbjct 12506 GTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATT 12565 Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403 || || | ||| || ||| | | || ||| |||||| |||||||| || | || | Sbjct 12566 TTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAA 12625 Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463 | ||||| ||||| || || || ||||| | || | || || ||||| |||||||| Sbjct 12626 TGCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAACTCT 12685 Query 63464 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGC 63523 |||||| || | | ||| || || || ||||| ||||| | ||||| || | | Sbjct 12686 CAACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTTTGA 12745 Query 63524 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63583 ||||||| | || | || ||||| ||||| ||| |||| |||||| | Sbjct 12746 ACGAATACAATGAACATTAACGCCAATTCCACCTGCTGATTTGCTAATTAGCGCGCATTG 12805 Query 63584 TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||||| |||||||| || || || || ||||| ||| || ||||| || Sbjct 12806 CTTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAGAAGAAAGCATGA 12865 Query 63644 AGACATTTGGTGACG 63658 ||||| ||| |||| Sbjct 12866 AGACAATTGAGGACG 12880 Score = 178 bits (196), Expect = 2e-39 Identities = 313/449 (70%), Gaps = 8/449 (2%) Strand=Plus/Plus Query 63706 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63765 ||||||| | |||||||| ||||||||||||| || |||||| | |||||| || | Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050 Query 63766 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACA 63825 | || || | ||| | ||| || || || | ||| ||||||| || || || |||| Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110 Query 63826 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63885 ||| | ||| || |||||||||||||||||||||||| || ||||| || || | Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170 Query 63886 TAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTG-AA 63944 | ||| | ||||| || ||| || ||| ||| || | ||| | | | | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCT-TATGATGGAATTCGCTA 13229 Query 63945 ATAATCGGAGAAT--GT-TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 64001 || || || || | || || || || | || |||| || | | ||| ||||| Sbjct 13230 ATCATTGGGGATTTAGTCTTTAGATATTCA--TTTTCCATA-TTATAAAGATCATCCATG 13286 Query 64002 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCT 64061 ||||||||||| |||| || || || ||||| || || || ||||| ||||| || ||| Sbjct 13287 ACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCAGCT 13346 Query 64062 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 64121 | || |||||||| | ||| | |||||| || |||||| |||| ||||| | | | Sbjct 13347 AAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAATTA 13406 Query 64122 TCCAATTCTACCGTTGTTACTCCATTATA 64150 |||| ||| ||||||||||| |||| Sbjct 13407 TCCAGTTCCTGTGTTGTTACTCCTGTATA 13435 >seq9081 Length=2203 Score = 230 bits (254), Expect = 3e-55 Identities = 567/847 (67%), Gaps = 15/847 (2%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| ||||| | ||||| ||||| || || | ||| || || ||||| || || Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCC 92 Query 33336 TCCAATGATATATTTTCCATGAAATCA-AACGGATTGGTAACATTGTAAAtttttttAAA 33394 || | ||| || |||||| |||| | || ||||| | ||| || | || | || Sbjct 93 TCAAGTGAAATTAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAG 151 Query 33395 TCCCAATTCAGA-AATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCAC 33453 ||||||||| ||| ||| ||| || |||||||| || ||| ||| | |||| Sbjct 152 TCCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCAC 210 Query 33454 AATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATA 33513 ||||||| || | | || |||||||| || |||| | |||||| | |||||| || Sbjct 211 AATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTA 270 Query 33514 CCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGT--AATAA-ATGTT 33570 | || | ||| ||||| ||| ||||| | ||||| | ||||| ||||| Sbjct 271 CAGCCTCTGTGATAATTTCAACAACTCGTTCTT---TTGGTGGCTTCTGAATAAGATGTT 327 Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630 | |||| || ||||| || || | || || || |||||||| ||| | ||| || | Sbjct 328 TGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTG 387 Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690 | || || | || ||||||| |||||||| |||| |||||| || | || || || Sbjct 388 AGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTC 447 Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-- 33748 | |||||| || || || || |||||||||||||||| || || ||| | || Sbjct 448 CACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCAT 507 Query 33749 GCTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 ||| | | |||||| ||| ||||| || ||||| || ||||| || || | || | Sbjct 508 GCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCT 567 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | || ||||| || | ||| | || ||| | |||||| || || | || Sbjct 568 CAATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAA 627 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 ||||| || || || | ||||| || || || || ||||| || || ||| || Sbjct 628 TCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAG 687 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 | || || | || ||||| || |||||||| ||| || ||||| || || || | Sbjct 688 CTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGT 747 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGT 34046 | || ||||| || || ||||| ||| ||||| | | || | | | ||| | Sbjct 748 CTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCT-TTAAT 806 Query 34047 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 34106 || | ||| ||| | |||||||| |||| ||| |||||||| |||||||| || ||| Sbjct 807 TTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCT 866 Query 34107 TCTGCCT 34113 || |||| Sbjct 867 TCAGCCT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629583961288560