Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq20099 122 2e-23 >seq20099 Length=4024 Score = 122 bits (134), Expect = 2e-23 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| Sbjct 1689 TGGTGGGTCGTGAAGGGCTCGAACCTTCGACCTACGGATTAAGAGTCCGCTGCTCTACCA 1748 Query 418 ACTGAGCTAACGACCCAATT 437 |||||||||||||||||||| Sbjct 1749 ACTGAGCTAACGACCCAATT 1768 Score = 98.7 bits (108), Expect = 2e-16 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1789 TGGTGGGTCGTGAAGGACTCGAACCTTCGACCAACGGATTAAAAGTCCGATGCTCTACC 1847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100668510462780