Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5596 569 2e-157 seq9081 333 2e-86 >seq5596 Length=16775 Score = 569 bits (630), Expect = 2e-157 Identities = 1158/1689 (69%), Gaps = 47/1689 (3%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || |||| |||| ||| | || | ||||||||| | ||||||||||||||| Sbjct 11253 TCAACAGTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTT 11312 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || ||||| ||||||| |||||||| ||| |||| ||| | || | || | Sbjct 11313 TTAAGTCCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCC 11372 Query 36910 TCTATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967 ||| || |||||| | ||||||||||||||| ||||| || || | || ||||||| Sbjct 11373 GCTACATGAATATTG--AATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCA 11430 Query 36968 TTTCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATT 37025 ||| || | | |||| ||||| ||||| || |||||||| || | ||| |||| Sbjct 11431 TTTG--AATTTGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATC 11488 Query 37026 ATCTGGTAAATC-TAAATG--TTGAATAGAACCATTATGTAACACAATTGTATTCTTTAT 37082 ||| || | || | ||| ||| || || ||||||| | | |||| |||||| || Sbjct 11489 ATCAGGAATTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCAT 11548 Query 37083 GTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGG-TGTGGATTTACAACCT 37141 ||||| || ||| | | | | | | || || |||| | || |||| ||||| | Sbjct 11549 GTCATCATCCCATAAACCACGTTCTGTCAAATC-CTTAATAAGATGATGATTAACAACTT 11607 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 |||| |||||| | || | | |||| | ||| || || || ||||||| || Sbjct 11608 GAAACTCTCCACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCT 11667 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 ||||||||| ||| || |||| ||| |||||||| ||||||||||||| || | || Sbjct 11668 CATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAAT 11727 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 | | | ||| | || ||| | | ||||| | | | ||||||||| || || |||| Sbjct 11728 TACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTG 11787 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | ||||| ||||||||||||||||| |||||||| ||||| | | | ||| | Sbjct 11788 GTGTCTTTTCCCACATATCATATTGTAATATACCTTTTGATACTGGACATCCTTCATACG 11847 Query 37382 TCTCATAAGGTCCGTAAATTTT--AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATA 37439 ||||||||| ||| || |||| ||| | ||| || || || |||| || ||||||| Sbjct 11848 TCTCATAAGTTCC--AAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATA 11905 Query 37440 TATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAAT-GCATAGC 37498 ||||| || || |||||| |||||||| ||| ||||| || ||| || |||| | Sbjct 11906 AATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGACTCGTATGGCAT-TC 11964 Query 37499 CCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCT 37558 || |||||||| ||||||| || || |||| || || || || || | |||| | Sbjct 11965 TCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAA 12024 Query 37559 TATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGAT 37618 || |||| | |||| |||||||| |||| | || || |||||||||| || Sbjct 12025 AGTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAAT 12084 Query 37619 TTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATA---AATACG-TTAT 37672 || | | ||| || || | | |||| || | ||| |||| |||| || Sbjct 12085 TTCTTGTGACTATCTTTGTGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATTTG 12144 Query 37673 TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGT 37732 || ||||| || | || | ||| ||| ||| |||||| ||||||||||||||| | Sbjct 12145 GCTTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCT---T 12201 Query 37733 TACT---AAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGC 37789 |||| | |||| | ||| || ||||| | ||| | | |||||||| | ||| Sbjct 12202 TACTTGAATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCT 12261 Query 37790 TTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTA 37849 |||||| ||||| |||||| | ||| ||||| || ||||| || |||||| || | Sbjct 12262 GTTGATTCGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAA 12321 Query 37850 TTTGAGCCTCGATAATAGATTTCCATAAA-CTTCTTGCTTTAACGATCGCTTTAAttttt 37908 ||||| || ||||| | ||||||| ||| | ||||| || | ||| | Sbjct 12322 CTTGAGATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTC 12381 Query 37909 ttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAA- 37967 | | || ||| ||| ||||||| || | ||| || || ||||| || ||||| Sbjct 12382 CT-TCTGCTTCATATCGAATATATAGATTTTCAAATTCTTT--ACCATAAGTCTCATAAA 12438 Query 37968 -TCCTGGACATTCGC-AT--GGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTT 38023 |||||||| || || |||||||||| |||||| ||||| ||||| || |||| Sbjct 12439 GACCTGGACA---GCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTT 12495 Query 38024 CCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGT 38083 |||||| || ||||| | |||||| ||| ||| | |||| | | | | |||||| | Sbjct 12496 GCATAAACAAGTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTT 12555 Query 38084 TCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATAT 38143 | || ||| || |||| |||||| || || | ||| | ||||| ||||| | || Sbjct 12556 TTCCAGTATTTTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAAT 12615 Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203 | | | | ||| || || | ||||| ||| || |||| || ||| | |||| |||| Sbjct 12616 AGACTGCAAATGCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTAT 12675 Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263 | || | ||| ||||||||||| | |||||| || | || ||| |||| | |||||| | Sbjct 12676 TGTAAACTCTCAACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATG 12735 Query 38264 TACCCTTAGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGAT-AT 38321 | || || | || ||| | | | | || || ||||||||||| || |||| | || Sbjct 12736 TCCCTTTTGAACGAATA-CAATGAACATTAACGCCAATTCCACCTGC-TGATTTGCTAAT 12793 Query 38322 TAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAG 38381 || |||||||| ||||| || ||| | || || || || |||||| |||| || Sbjct 12794 TAGCGCGCATTGCTTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAG 12853 Query 38382 TATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGC 38441 | ||| || ||||| |||||| ||| || | || || | ||| || ||||| Sbjct 12854 AAGAAAGCATGAAGACAATTGAGGACGTGGTGTAGCTGCTGCGAAAAGTGTTGGTGATGC 12913 Query 38442 ATGTATGAA 38450 |||| |||| Sbjct 12914 ATGTGTGAA 12922 >seq9081 Length=2203 Score = 333 bits (368), Expect = 2e-86 Identities = 577/829 (70%), Gaps = 21/829 (3%) Strand=Plus/Plus Query 11337 TCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 ||||||||||||| | ||| |||||| || || |||||||| || || ||||| || Sbjct 46 TCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTA 105 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456 | |||||||| || ||||| | ||| |||| || ||| || || || || Sbjct 106 ATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTA 165 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 |||| ||| || |||||||| || || | |||||||||| ||||||||| || | | Sbjct 166 ATAAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACA 225 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | || |||| || | |||||||| |||||||| || || || || || |||| | Sbjct 226 TCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAA 285 Query 11577 TCGACGTT--ATAACT---TCCTTAGATGGTGGATGTAATAA-ATGTTTAAACATTAAAC 11630 | || | |||| || || | ||| || ||||| |||||| ||||||| | Sbjct 286 T-----TTCAACAACTCGTTCTTTTGGTGGCTTCTG-AATAAGATGTTTGTACATTAAGC 339 Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690 | ||||| |||| ||| | ||||||||||| || |||||||| || ||||| || | Sbjct 340 ATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAAC 399 Query 11691 CGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATA 11750 | ||||| ||||| || || || |||||||| || || ||||| ||| |||||| | Sbjct 400 CTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAA 459 Query 11751 TTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCA---TATACCTTGTTGCTAGATA 11807 | ||||| ||||| ||||| || | |||| ||| ||| | | | | || || |||| Sbjct 460 TCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATA 519 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 |||| ||| |||||| || || || || |||||||| | || || ||||| || | Sbjct 520 TCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGA 579 Query 11868 ATAAATGCATTTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACTA-TACA 11924 |||| | | | || || ||| | | ||| || || ||| | || | | |||| Sbjct 580 ATAA--GAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATT-AGAATCGAGTACA 636 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | ||||| || | |||||||||||| ||||| |||||||| || |||| || |||| Sbjct 637 TCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTA 696 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 || || ||| | |||| ||| ||| |||||||||||||| || || | | Sbjct 697 CTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAG 756 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAAT 12104 |||| ||||||| || ||| ||||||| ||| | ||||||| ||||| | Sbjct 757 CAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGT 816 Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC 12153 || | ||||||||||||||| |||||||| || ||||| || ||||| Sbjct 817 CACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGC 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468350994868880