Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 569 2e-157
seq9081 333 2e-86
>seq5596
Length=16775
Score = 569 bits (630), Expect = 2e-157
Identities = 1158/1689 (69%), Gaps = 47/1689 (3%)
Strand=Plus/Plus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||| || |||| |||| ||| | || | ||||||||| | |||||||||||||||
Sbjct 11253 TCAACAGTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTT 11312
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || ||||| ||||||| |||||||| ||| |||| ||| | || | || |
Sbjct 11313 TTAAGTCCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCC 11372
Query 36910 TCTATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967
||| || |||||| | ||||||||||||||| ||||| || || | || |||||||
Sbjct 11373 GCTACATGAATATTG--AATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCA 11430
Query 36968 TTTCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATT 37025
||| || | | |||| ||||| ||||| || |||||||| || | ||| ||||
Sbjct 11431 TTTG--AATTTGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATC 11488
Query 37026 ATCTGGTAAATC-TAAATG--TTGAATAGAACCATTATGTAACACAATTGTATTCTTTAT 37082
||| || | || | ||| ||| || || ||||||| | | |||| |||||| ||
Sbjct 11489 ATCAGGAATTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCAT 11548
Query 37083 GTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGG-TGTGGATTTACAACCT 37141
||||| || ||| | | | | | | || || |||| | || |||| ||||| |
Sbjct 11549 GTCATCATCCCATAAACCACGTTCTGTCAAATC-CTTAATAAGATGATGATTAACAACTT 11607
Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201
|||| |||||| | || | | |||| | ||| || || || ||||||| ||
Sbjct 11608 GAAACTCTCCACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCT 11667
Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261
||||||||| ||| || |||| ||| |||||||| ||||||||||||| || | ||
Sbjct 11668 CATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAAT 11727
Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321
| | | ||| | || ||| | | ||||| | | | ||||||||| || || ||||
Sbjct 11728 TACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTG 11787
Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381
| ||||| ||||||||||||||||| |||||||| ||||| | | | ||| |
Sbjct 11788 GTGTCTTTTCCCACATATCATATTGTAATATACCTTTTGATACTGGACATCCTTCATACG 11847
Query 37382 TCTCATAAGGTCCGTAAATTTT--AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATA 37439
||||||||| ||| || |||| ||| | ||| || || || |||| || |||||||
Sbjct 11848 TCTCATAAGTTCC--AAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATA 11905
Query 37440 TATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAAT-GCATAGC 37498
||||| || || |||||| |||||||| ||| ||||| || ||| || |||| |
Sbjct 11906 AATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGACTCGTATGGCAT-TC 11964
Query 37499 CCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCT 37558
|| |||||||| ||||||| || || |||| || || || || || | |||| |
Sbjct 11965 TCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAA 12024
Query 37559 TATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGAT 37618
|| |||| | |||| |||||||| |||| | || || |||||||||| ||
Sbjct 12025 AGTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAAT 12084
Query 37619 TTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATA---AATACG-TTAT 37672
|| | | ||| || || | | |||| || | ||| |||| |||| ||
Sbjct 12085 TTCTTGTGACTATCTTTGTGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATTTG 12144
Query 37673 TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGT 37732
|| ||||| || | || | ||| ||| ||| |||||| ||||||||||||||| |
Sbjct 12145 GCTTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCT---T 12201
Query 37733 TACT---AAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGC 37789
|||| | |||| | ||| || ||||| | ||| | | |||||||| | |||
Sbjct 12202 TACTTGAATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCT 12261
Query 37790 TTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTA 37849
|||||| ||||| |||||| | ||| ||||| || ||||| || |||||| || |
Sbjct 12262 GTTGATTCGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAA 12321
Query 37850 TTTGAGCCTCGATAATAGATTTCCATAAA-CTTCTTGCTTTAACGATCGCTTTAAttttt 37908
||||| || ||||| | ||||||| ||| | ||||| || | ||| |
Sbjct 12322 CTTGAGATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTC 12381
Query 37909 ttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAA- 37967
| | || ||| ||| ||||||| || | ||| || || ||||| || |||||
Sbjct 12382 CT-TCTGCTTCATATCGAATATATAGATTTTCAAATTCTTT--ACCATAAGTCTCATAAA 12438
Query 37968 -TCCTGGACATTCGC-AT--GGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTT 38023
|||||||| || || |||||||||| |||||| ||||| ||||| || ||||
Sbjct 12439 GACCTGGACA---GCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTT 12495
Query 38024 CCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGT 38083
|||||| || ||||| | |||||| ||| ||| | |||| | | | | |||||| |
Sbjct 12496 GCATAAACAAGTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTT 12555
Query 38084 TCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATAT 38143
| || ||| || |||| |||||| || || | ||| | ||||| ||||| | ||
Sbjct 12556 TTCCAGTATTTTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAAT 12615
Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203
| | | | ||| || || | ||||| ||| || |||| || ||| | |||| ||||
Sbjct 12616 AGACTGCAAATGCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTAT 12675
Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263
| || | ||| ||||||||||| | |||||| || | || ||| |||| | |||||| |
Sbjct 12676 TGTAAACTCTCAACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATG 12735
Query 38264 TACCCTTAGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGAT-AT 38321
| || || | || ||| | | | | || || ||||||||||| || |||| | ||
Sbjct 12736 TCCCTTTTGAACGAATA-CAATGAACATTAACGCCAATTCCACCTGC-TGATTTGCTAAT 12793
Query 38322 TAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAG 38381
|| |||||||| ||||| || ||| | || || || || |||||| |||| ||
Sbjct 12794 TAGCGCGCATTGCTTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAG 12853
Query 38382 TATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGC 38441
| ||| || ||||| |||||| ||| || | || || | ||| || |||||
Sbjct 12854 AAGAAAGCATGAAGACAATTGAGGACGTGGTGTAGCTGCTGCGAAAAGTGTTGGTGATGC 12913
Query 38442 ATGTATGAA 38450
|||| ||||
Sbjct 12914 ATGTGTGAA 12922
>seq9081
Length=2203
Score = 333 bits (368), Expect = 2e-86
Identities = 577/829 (70%), Gaps = 21/829 (3%)
Strand=Plus/Plus
Query 11337 TCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396
||||||||||||| | ||| |||||| || || |||||||| || || ||||| ||
Sbjct 46 TCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTA 105
Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456
| |||||||| || ||||| | ||| |||| || ||| || || || ||
Sbjct 106 ATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTA 165
Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516
|||| ||| || |||||||| || || | |||||||||| ||||||||| || | |
Sbjct 166 ATAAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACA 225
Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576
| || |||| || | |||||||| |||||||| || || || || || |||| |
Sbjct 226 TCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAA 285
Query 11577 TCGACGTT--ATAACT---TCCTTAGATGGTGGATGTAATAA-ATGTTTAAACATTAAAC 11630
| || | |||| || || | ||| || ||||| |||||| ||||||| |
Sbjct 286 T-----TTCAACAACTCGTTCTTTTGGTGGCTTCTG-AATAAGATGTTTGTACATTAAGC 339
Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690
| ||||| |||| ||| | ||||||||||| || |||||||| || ||||| || |
Sbjct 340 ATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAAC 399
Query 11691 CGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATA 11750
| ||||| ||||| || || || |||||||| || || ||||| ||| |||||| |
Sbjct 400 CTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAA 459
Query 11751 TTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCA---TATACCTTGTTGCTAGATA 11807
| ||||| ||||| ||||| || | |||| ||| ||| | | | | || || ||||
Sbjct 460 TCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATA 519
Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867
|||| ||| |||||| || || || || |||||||| | || || ||||| || |
Sbjct 520 TCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGA 579
Query 11868 ATAAATGCATTTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACTA-TACA 11924
|||| | | | || || ||| | | ||| || || ||| | || | | ||||
Sbjct 580 ATAA--GAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATT-AGAATCGAGTACA 636
Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984
| ||||| || | |||||||||||| ||||| |||||||| || |||| || ||||
Sbjct 637 TCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTA 696
Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044
|| || ||| | |||| ||| ||| |||||||||||||| || || | |
Sbjct 697 CTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAG 756
Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAAT 12104
|||| ||||||| || ||| ||||||| ||| | ||||||| ||||| |
Sbjct 757 CAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGT 816
Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC 12153
|| | ||||||||||||||| |||||||| || ||||| || |||||
Sbjct 817 CACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGC 865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468350994868880
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