Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5596 455 4e-123 seq9081 271 1e-67 >seq5596 Length=16775 Score = 455 bits (504), Expect = 4e-123 Identities = 1086/1635 (66%), Gaps = 35/1635 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 || |||||||| | | | || | ||| || | || || |||||||| ||||| || Sbjct 11259 GTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTTTTAAGT 11318 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | ||||||| |||||||| ||| || | ||| |||| | || || |||| | Sbjct 11319 CCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCCGCTACA 11378 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || ||||| | ||||||||||||||||| || ||||| | || || ||||||| || Sbjct 11379 TGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCATTTGAATT 11438 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 ||||| | |||||||| | |||||||||| |||||||| || |||| Sbjct 11439 TGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCATCAGGAA-- 11496 Query 65079 TTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 65133 ||| || || || || ||| || | | ||||| |||||| || ||||||| Sbjct 11497 TTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCATGTCATCAT 11556 Query 65134 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 65193 |||||| | || || ||| | ||| ||||| ||||||| |||||||| |||| Sbjct 11557 CCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTTGAAACTCTC 11616 Query 65194 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 65253 || | || | ||| | |||| |||||| || |||||||| | | ||||||||| | Sbjct 11617 CACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCTCATTATTAC 11676 Query 65254 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 65313 | ||||| ||||| ||||||||||| ||||| ||||| | || || ||| | ||||| Sbjct 11677 CTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAATTACGAAGAC 11736 Query 65314 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 65373 | | | ||||||| ||||||| | |||||||| ||| | || | ||| Sbjct 11737 CAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTGGTGTCTTTT 11796 Query 65374 NNNNNNNNNNNNNTTGTAGAATACC----GTTACTGGCGTACGATCCTACATATGTATCG 65429 ||||| ||||| | |||||| || ||||| |||| || || Sbjct 11797 CCCACATATCATATTGTAATATACCTTTTGATACTGG---AC-ATCCTTCATACGTCTCA 11852 Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489 || | ||| || ||||| | |||||| |||| |||||| || || |||||||| || Sbjct 11853 TAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATAAATTGTC 11912 Query 65490 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGA 65547 || || || | | ||||| || ||||| ||| | || |||| | | | Sbjct 11913 TCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGAC--TCGTATGGCATTCTCATCA 11970 Query 65548 GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 65607 ||||| || || ||||||||||||| ||||| ||||| || | |||||| || | Sbjct 11971 ATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAAAGTTTG 12030 Query 65608 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC--- 65664 | || ||||||| || ||||| |||||| || ||||||||||| | ||||| Sbjct 12031 ATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAATTTCTTG 12090 Query 65665 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT---- 65720 |||| || ||||| || ||||||| ||| | |||||| || || | ||| Sbjct 12091 TGACTAT--CTTTG-TGACTTCCTTCAATTTATGGAAATCATAT-TCTTTACGATTTGGC 12146 Query 65721 ---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 |||||||| || || |||| ||||| | |||||| || || || |||| | Sbjct 12147 TTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTTACTT 12206 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | |||||| | || ||||| || | ||| || ||| ||||| | ||| |||||| Sbjct 12207 GAATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGA 12266 Query 65838 TTACTCTTTTTG-TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 65896 || | ||| | ||||| ||||||||||| || || | || || || || |||| || Sbjct 12267 TT-CGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAACTTG 12325 Query 65897 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC 65956 |||||| ||||| || ||| | || | ||||||| | | | ||| ||| Sbjct 12326 AGATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTCCTTC 12385 Query 65957 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 66016 | ||| ||| | |||| | ||| || || | || || | | | || || Sbjct 12386 TGCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGACCTGG 12445 Query 66017 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 66076 ||| || |||||||| || |||||| | | | | | || |||| |||||| | Sbjct 12446 ACAGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAACAA 12505 Query 66077 ATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 66136 ||||||||||| | ||| ||| | |||||| | | | ||| || ||||| ||||| Sbjct 12506 GTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATT 12565 Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196 || || | ||| || ||| | | || ||| |||||| |||||||| || | || | Sbjct 12566 TTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAA 12625 Query 66197 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 66256 | ||||| ||||| || || || ||||| | || | || || ||||| |||||||| Sbjct 12626 TGCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAACTCT 12685 Query 66257 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC 66316 |||||| || | | |||||| || | ||||| || || | ||||| | || ||| Sbjct 12686 CAACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTTTGA 12745 Query 66317 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376 ||||||| | || | || ||||| ||||| ||| |||| |||||| | Sbjct 12746 ACGAATACAATGAACATTAACGCCAATTCCACCTGCTGATTTGCTAATTAGCGCGCATTG 12805 Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| || ||||| || ||||| || ||||| ||| || ||||| || Sbjct 12806 CTTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAGAAGAAAGCATGA 12865 Query 66437 AGACATTTGGTGACG 66451 ||||| ||| |||| Sbjct 12866 AGACAATTGAGGACG 12880 Score = 165 bits (182), Expect = 1e-35 Identities = 321/467 (69%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 66499 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 66558 ||||||| | |||||||| ||||||||||||| || |||||| | |||||| || | Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050 Query 66559 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 66618 | || || | ||| | ||| || || || | ||| | || || || || || |||| Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110 Query 66619 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 66678 ||| | ||| || |||||||||||||||||||||||| || ||||| || || | Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170 Query 66679 TAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTG-AA 66737 | ||| | || || ||| ||| || ||| ||| | | ||| | | | | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCT-TATGATGGAATTCGCTA 13229 Query 66738 ATAATCGGAGAAT--GT-TTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794 || || || || | || || || || | || |||| || | | ||| ||||| Sbjct 13230 ATCATTGGGGATTTAGTCTTTAGATATTCA--TTTTCCATA-TTATAAAGATCATCCATG 13286 Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854 ||||||||||| |||| || || |||||||| || || || | ||| ||||| || ||| Sbjct 13287 ACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCAGCT 13346 Query 66855 ATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 66914 | || |||||||| | ||| | |||||| || |||||| |||| ||||| | | | Sbjct 13347 AAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAATTA 13406 Query 66915 TCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 66961 |||| ||| ||||||||||| |||| | || | ||| || || Sbjct 13407 TCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTT 13453 >seq9081 Length=2203 Score = 271 bits (300), Expect = 1e-67 Identities = 574/846 (68%), Gaps = 13/846 (2%) Strand=Plus/Plus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| ||||| | ||||| ||||| || || | ||| || || ||||| || || Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCC 92 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 || | ||| || |||||| || ||||||||| | |||||| | || | || | Sbjct 93 TCAAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGT 152 Query 35972 CCCAATTCAGA-AATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 36030 |||||||| ||| ||| ||| || || ||||| || ||| ||| | ||||| Sbjct 153 CCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCACA 211 Query 36031 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 36090 |||||| || | | || |||||||| || |||| | |||||| | |||||| || Sbjct 212 ATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTAC 271 Query 36091 CGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATAC--AATAA-ATGTTT 36147 || ||||| ||||| | ||| ||||| | ||||| | | ||||| |||||| Sbjct 272 AGCCTCTGTGATAATTTCAACAACTCGTTCTT---TTGGTGGCTTCTGAATAAGATGTTT 328 Query 36148 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 |||| || ||||| || || | || || || |||||||| ||| | ||| || || Sbjct 329 GTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGA 388 Query 36208 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 36267 || || | || ||||||| |||||||| |||| |||||| || | ||||| ||| Sbjct 389 GAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCC 448 Query 36268 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 36327 | ||||||||| || || || || ||||||||||||| || || ||| | ||| Sbjct 449 ACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATG 508 Query 36328 GTCA-TG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 | | || |||||| ||| ||||| || ||||| || ||||| || || | ||||| Sbjct 509 CTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTC 568 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444 |||||||| || | ||| | || ||| | ||| || ||||| | || Sbjct 569 AATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAAT 628 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 ||||| || || || | ||||| || || ||||| ||||| || || ||| ||| Sbjct 629 CGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGC 688 Query 36505 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 36564 || || | || ||||| || |||||||| ||| || ||||| || || ||||| Sbjct 689 TTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTC 748 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTTTGGTGTTAGTT 36623 || ||||| || || ||||| ||| ||||| | | || | | | ||| || Sbjct 749 TGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCT-TTAATT 807 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | | ||| ||| | |||||||| |||| ||| |||||||| |||||||| || ||| | Sbjct 808 TTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTT 867 Query 36684 CTGCCT 36689 | |||| Sbjct 868 CAGCCT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657928642572680