Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq3668 98.7 1e-15
seq5596 87.8 2e-12
>seq3668
Length=32275
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| || || | || || || ||||| || || || || |||
Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||| | || | ||||| | ||||||||||| |||| | |||||| ||||| || ||
Sbjct 30840 AATGTACGTCCA-TCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 30782
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| ||| ||| || | | ||| | ||||| | ||||| ||
Sbjct 30781 AATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAAC 30722
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | || || || || || ||||| ||||| ||||||||
Sbjct 30721 TTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674
>seq5596
Length=16775
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 153427 CGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGG 153486
|||| || || | || || | ||| ||||| || || |||||||| ||||| || || |
Sbjct 11953 CGTATGGCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTG 12012
Query 153487 GACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAA 153546
||||||| | | || ||| ||| || ||||||| ||||||||||| || ||||
Sbjct 12013 GACGATGTCTAAAGTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAA 12072
Query 153547 TTTTATTTAAA 153557
|||||||||||
Sbjct 12073 TTTTATTTAAA 12083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495879978858400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |