Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3668 98.7 1e-15 seq5596 87.8 2e-12 >seq3668 Length=32275 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || || | || || || ||||| || || || || ||| Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| | ||||||||||| |||| | |||||| ||||| || || Sbjct 30840 AATGTACGTCCA-TCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 30782 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| ||| || | | ||| | ||||| | ||||| || Sbjct 30781 AATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAAC 30722 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || || ||||| ||||| |||||||| Sbjct 30721 TTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674 >seq5596 Length=16775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 153427 CGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGG 153486 |||| || || | || || | ||| ||||| || || |||||||| ||||| || || | Sbjct 11953 CGTATGGCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTG 12012 Query 153487 GACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAA 153546 ||||||| | | || ||| ||| || ||||||| ||||||||||| || |||| Sbjct 12013 GACGATGTCTAAAGTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAA 12072 Query 153547 TTTTATTTAAA 153557 ||||||||||| Sbjct 12073 TTTTATTTAAA 12083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495879978858400