Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5596 457 1e-123 seq9081 255 8e-63 >seq5596 Length=16775 Score = 457 bits (506), Expect = 1e-123 Identities = 1090/1633 (67%), Gaps = 31/1633 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 || |||||||| | | | || | ||| || | || || |||||||| ||||| || Sbjct 11259 GTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTTTTAAGT 11318 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | ||||||| || ||||| ||| || | ||| |||| | || || |||| | Sbjct 11319 CCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCCGCTACA 11378 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || ||||| | ||||||||||||||||| || ||||| | || || ||||||| || Sbjct 11379 TGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCATTTGAATT 11438 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 ||||| | |||||||| | |||||||||| |||||||| || |||| Sbjct 11439 TGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCATCAGGAA-- 11496 Query 78958 TTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCAT 79012 ||| || || || || ||| || | | ||||| |||||| || || |||| Sbjct 11497 TTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCATGTCATCAT 11556 Query 79013 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 79072 |||||| | || || ||| | ||| ||||| ||||||| |||||||| |||| Sbjct 11557 CCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTTGAAACTCTC 11616 Query 79073 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTC 79132 || | || | ||| | |||| |||||| || || ||||| | |||||||| | Sbjct 11617 CACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCTCATTATTAC 11676 Query 79133 CCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 79192 | ||||| ||||| |||||||| |||||||| ||||| | || || ||| | ||||| Sbjct 11677 CTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAATTACGAAGAC 11736 Query 79193 CGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACAT 79252 | | ||||||| ||||||| | |||||||||||| | |||| || | Sbjct 11737 CAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTGGTGTCTTTT 11796 Query 79253 TCCAAAGATCATATTGTAGAATACC-GTTACTAGCGTATGATCCTGTGTATGTTTCATAA 79311 ||| | ||||||||||| ||||| || || | | ||||| || || |||||| Sbjct 11797 CCCACATATCATATTGTAATATACCTTTTGATACTGGA-CATCCTTCATACGTCTCATAA 11855 Query 79312 GGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCG 79371 | ||| ||||| || |||||||| |||| |||||| ||||| |||||||| || || Sbjct 11856 GTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATAAATTGTCTCA 11915 Query 79372 AAAATCTTCTTATTGAGATCTTGTGCTTC--TAGGCTATCAAATGGATAATTTAAGAGAA 79429 || || | | ||| | || ||||| || | || |||| | | | | Sbjct 11916 AATATTTGTTGATTTAATAATTTAGCTTCATCAGAC--TCGTATGGCATTCTCATCAATA 11973 Query 79430 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAA 79489 |||| || || ||||||||||||| ||||| ||||| || | |||||| || || Sbjct 11974 TAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAAAGTTTGATC 12033 Query 79490 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC---TGA 79546 || ||||||| || ||||| |||||| || ||||||||||| | ||| | ||| Sbjct 12034 GTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAATTTCTTGTGA 12093 Query 79547 CTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGT---CCATCT---ATTA 79600 |||| ||||| || ||||| | ||| | |||||| || | | || | | | Sbjct 12094 CTAT--CTTTG-TGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATTTGGCTTGA 12150 Query 79601 CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 79660 ||||||| || || || | ||||| | |||||| || || || |||| | | || Sbjct 12151 CAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTTACTTGAAT 12210 Query 79661 ATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTAC 79720 |||| | |||||||| || | || || || ||||| | ||| |||||||| | Sbjct 12211 ATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGATT-C 12269 Query 79721 TCTTTTTG-TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||| | ||||| ||||||||||| || || | || || || || |||| |||||| Sbjct 12270 GATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAACTTGAGAT 12329 Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTT--TTCTC 79837 || ||||| || ||| | || | ||||||| | ||| || || | |||| Sbjct 12330 TCAATAATTGCAAACCATAAATCTTGTGCCTTTA--CTTGACGAATAAATCGTCCTTCTG 12387 Query 79838 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 ||| ||| | |||||| ||| || || | || || || | | || |||| Sbjct 12388 CTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGACCTGGAC 12447 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 | | ||||||||| || |||||| | ||| | | || |||| |||||| | | Sbjct 12448 AGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAACAAGT 12507 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 |||||||||| | ||| ||| | |||||| | | | || || ||||| ||||| | Sbjct 12508 CAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATTTT 12567 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | || | ||| || ||| | | || ||| |||||| |||||||| || | || | Sbjct 12568 TCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAATG 12627 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 | || || ||||| || || || ||||| | || | || || ||||| |||||||||| Sbjct 12628 CACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAACTCTCA 12687 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 |||| || | | |||||| || | ||||| || || | ||||| | || | | || Sbjct 12688 ACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTTTGAAC 12747 Query 80198 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 80257 ||||| | || | || ||||| ||||| ||| |||| |||||| | | Sbjct 12748 GAATACAATGAACATTAACGCCAATTCCACCTGCTGATTTGCTAATTAGCGCGCATTGCT 12807 Query 80258 TTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAG 80317 |||| || ||||| || ||||| || |||||| ||| || ||||| || || Sbjct 12808 TTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAGAAGAAAGCATGAAG 12867 Query 80318 ACATTTGGTGACG 80330 ||| ||| |||| Sbjct 12868 ACAATTGAGGACG 12880 Score = 174 bits (192), Expect = 2e-38 Identities = 323/467 (69%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 80378 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTA 80437 ||||||||| |||||||| ||||||||||||| || |||||| | |||||| || | Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050 Query 80438 CCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 80497 | || || | ||| | ||| || || || | ||| | || || || || || |||| Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110 Query 80498 AGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 80557 || | ||| || |||||||||||||||||||||||| || ||||| || || | Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170 Query 80558 TAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGA-A 80616 | ||| | || || ||| ||| || ||| ||| | | ||| || | | | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCTT-ATGATGGAATTCGCTA 13229 Query 80617 ATAATCGGAGAAT--GT-TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 80673 || || || || | || || || || | || |||| | || | ||| ||||| Sbjct 13230 ATCATTGGGGATTTAGTCTTTAGATATTCAT--TTTCCATATTATAA-AGATCATCCATG 13286 Query 80674 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 80733 ||||||||||| |||| || || || ||||| || || || | ||| ||||| || ||| Sbjct 13287 ACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCAGCT 13346 Query 80734 AAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 80793 |||| |||||||||| ||| | |||||| || |||||| |||| ||||| | | | Sbjct 13347 AAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAATTA 13406 Query 80794 TCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 |||| ||| ||||||||||| |||| | || | ||| || || Sbjct 13407 TCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTT 13453 >seq9081 Length=2203 Score = 255 bits (282), Expect = 8e-63 Identities = 573/848 (68%), Gaps = 17/848 (2%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| ||||| | ||||| ||||| || || | ||| || || ||||| || || Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCC 92 Query 49714 TCCAATGATATATTTTCCATGAAATCA-AACGGATTGGTAACATTATAAAtttttttAAA 49772 || | ||| || |||||| |||| | || ||||| | |||||| | || | || Sbjct 93 TCAAGTGAAATTAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAG 151 Query 49773 TCCCAATTCAGA-AATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCAC 49831 ||||||||| ||| ||| ||| || || ||||| || ||| ||| | |||| Sbjct 152 TCCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCAC 210 Query 49832 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 49891 ||||||| || | | || |||||||| || |||| | |||||| | |||||| || Sbjct 211 AATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTA 270 Query 49892 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC--AATAA-ATGTT 49948 | || ||||| ||||| | ||| | ||| | ||||| | | ||||| ||||| Sbjct 271 CAGCCTCTGTGATAAT---TTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTT 327 Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 | |||| || ||||| || || | || || || |||||||| ||| ||||| || | Sbjct 328 TGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTG 387 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068 | || || | || ||||||| |||||||| |||| |||||| || | ||||| | Sbjct 388 AGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTC 447 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-- 50126 || |||||| || || || || || |||||||||| || || || ||| | | || Sbjct 448 CACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCAT 507 Query 50127 GCTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 ||| | | |||||| ||| ||||| || ||||| || ||||| || || | || | Sbjct 508 GCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCT 567 Query 50186 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 50245 | || ||||| || | ||| | || ||| | |||||| || || | || Sbjct 568 CAATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAA 627 Query 50246 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 50305 ||||| || || || | ||||| || || || || ||||| || || ||| || Sbjct 628 TCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAG 687 Query 50306 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365 | || || | || ||||| || ||||||||| ||| || ||||| || || |||| Sbjct 688 CTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGT 747 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGT--GTTAG 50423 | || ||||| || || ||||| ||| ||||| || ||| || | ||| Sbjct 748 CTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTC--TGAATCCTTTAA 805 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 ||| | ||| ||| | |||||||| |||| ||| |||||||| |||||||| || ||| Sbjct 806 TTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGC 865 Query 50484 CTCTGCCT 50491 || |||| Sbjct 866 TTCAGCCT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718002349210280