Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq9081 320 2e-82
seq27324 91.5 1e-13
>seq9081
Length=2203
Score = 320 bits (354), Expect = 2e-82
Identities = 572/828 (69%), Gaps = 8/828 (1%)
Strand=Plus/Plus
Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640
||||||||||| | ||| || ||||||||||||||| || || || ||||| || |
Sbjct 48 TTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAAT 107
Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 13700
|||||||| ||||||||| | | || | || || ||| || | ||| || |
Sbjct 108 TCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAAT 167
Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760
|| ||| || | || ||||| |||| ||||||||||||||||||||| || | |
Sbjct 168 AAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATC 227
Query 13761 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATA 13820
||||| |||| | | || |||||||| ||||| || ||||||||| | |||||
Sbjct 228 TTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAAT- 286
Query 13821 ATTGTAATAATC--TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878
|| | | || || || | || | | |||||||| | ||||| || ||||
Sbjct 287 -TTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCAA 345
Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938
| |||| |||||| || || ||||| ||||||||| ||||| ||||| || |||||||
Sbjct 346 AGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGCA 405
Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998
| ||||| || || || | |||||| ||||| ||||| || |||||| || ||||
Sbjct 406 TTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCCT 465
Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058
| || |||||||| || || | |||||| ||||| ||| | || | |||||||| |
Sbjct 466 CGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAAT 525
Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118
|| ||||| || | ||||| || | | | || ||||||||||| |||||
Sbjct 526 TTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGAATAAGA 585
Query 14119 ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAG 14177
| || || || | | || || || ||||| || || | | ||||| || |||
Sbjct 586 AGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAG-AATCGAGTACATCTCTGAG 644
Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237
|||| ||||||||||| || || || ||||||||| ||| |||||| | ||| |||
Sbjct 645 TGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAACT 704
Query 14238 TCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296
||| || | |||| ||| || || ||||| || || || || || ||||| ||
Sbjct 705 TCCTGACT-GAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGAA 763
Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAA 14356
||| |||| || | ||||||| | ||| || || | ||||| ||| || |
Sbjct 764 TGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTCAT 823
Query 14357 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404
||| || || | ||| ||||| || |||||||| || || || ||||
Sbjct 824 ATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTTCAGC 871
>seq27324
Length=21994
Score = 91.5 bits (100), Expect = 1e-13
Identities = 170/243 (70%), Gaps = 9/243 (4%)
Strand=Plus/Plus
Query 121024 TATTaaaaaaaa-aCTAGAAGGGTTGATATTAAAAGGAATAAATATTAATTATGTACCTG 121082
|||| || ||| ||| ||||| || |||| ||||| | | | | ||||| || |
Sbjct 4976 TATTGAAGAAAGGACTTGAAGGATTAGTATTGAAAGGTCTCGAAACAATTTATGAGCCGG 5035
Query 121083 GAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAGATG-ATGGATCCATGGCAGAT 121141
||||||| | ||||||||| | || |||||||| ||| ||| | ||||| || |||||
Sbjct 5036 GAAAAAGGCGATGGTTAAAGGTCAAAAAGGATTATTTA-ATGCAAGGATCAATAGCAGAC 5094
Query 121142 TCTGCAGACTTAGTAGTTTTAGGATCATATTACGGTAAAGGGTCTAAGGGTGGTACACCA 121201
||||||||| || || || || | | ||| || || |||| ||| |||| | |
Sbjct 5095 AGTGCAGACTTGGTCGTGTTGGGTGCTTTTTATGG-AACGGGT--AAGATGGGTAATCGA 5151
Query 121202 TCAA---TATTTTTAATGGGGTGTTATGATAATGAAAGTAATAATTGGAAAACTGTAACT 121258
| | | ||||||||||| ||||||||| | || |||| ||||| || || ||
Sbjct 5152 TTTAGTATCTTTTTAATGGGATGTTATGATGAGAAATGTAAAGTATGGAAGACAGTCACA 5211
Query 121259 AAA 121261
|||
Sbjct 5212 AAA 5214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479550038901800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |