Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq9081 320 2e-82 seq27324 91.5 1e-13 >seq9081 Length=2203 Score = 320 bits (354), Expect = 2e-82 Identities = 572/828 (69%), Gaps = 8/828 (1%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||||||||| | ||| || ||||||||||||||| || || || ||||| || | Sbjct 48 TTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAAT 107 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 13700 |||||||| ||||||||| | | || | || || ||| || | ||| || | Sbjct 108 TCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAAT 167 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760 || ||| || | || ||||| |||| ||||||||||||||||||||| || | | Sbjct 168 AAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATC 227 Query 13761 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATA 13820 ||||| |||| | | || |||||||| ||||| || ||||||||| | ||||| Sbjct 228 TTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAAT- 286 Query 13821 ATTGTAATAATC--TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 || | | || || || | || | | |||||||| | ||||| || |||| Sbjct 287 -TTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCAA 345 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | |||| |||||| || || ||||| ||||||||| ||||| ||||| || ||||||| Sbjct 346 AGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGCA 405 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | ||||| || || || | |||||| ||||| ||||| || |||||| || |||| Sbjct 406 TTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCCT 465 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058 | || |||||||| || || | |||||| ||||| ||| | || | |||||||| | Sbjct 466 CGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAAT 525 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118 || ||||| || | ||||| || | | | || ||||||||||| ||||| Sbjct 526 TTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGAATAAGA 585 Query 14119 ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAG 14177 | || || || | | || || || ||||| || || | | ||||| || ||| Sbjct 586 AGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAG-AATCGAGTACATCTCTGAG 644 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 |||| ||||||||||| || || || ||||||||| ||| |||||| | ||| ||| Sbjct 645 TGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAACT 704 Query 14238 TCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 ||| || | |||| ||| || || ||||| || || || || || ||||| || Sbjct 705 TCCTGACT-GAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGAA 763 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAA 14356 ||| |||| || | ||||||| | ||| || || | ||||| ||| || | Sbjct 764 TGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTCAT 823 Query 14357 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 ||| || || | ||| ||||| || |||||||| || || || |||| Sbjct 824 ATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTTCAGC 871 >seq27324 Length=21994 Score = 91.5 bits (100), Expect = 1e-13 Identities = 170/243 (70%), Gaps = 9/243 (4%) Strand=Plus/Plus Query 121024 TATTaaaaaaaa-aCTAGAAGGGTTGATATTAAAAGGAATAAATATTAATTATGTACCTG 121082 |||| || ||| ||| ||||| || |||| ||||| | | | | ||||| || | Sbjct 4976 TATTGAAGAAAGGACTTGAAGGATTAGTATTGAAAGGTCTCGAAACAATTTATGAGCCGG 5035 Query 121083 GAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAGATG-ATGGATCCATGGCAGAT 121141 ||||||| | ||||||||| | || |||||||| ||| ||| | ||||| || ||||| Sbjct 5036 GAAAAAGGCGATGGTTAAAGGTCAAAAAGGATTATTTA-ATGCAAGGATCAATAGCAGAC 5094 Query 121142 TCTGCAGACTTAGTAGTTTTAGGATCATATTACGGTAAAGGGTCTAAGGGTGGTACACCA 121201 ||||||||| || || || || | | ||| || || |||| ||| |||| | | Sbjct 5095 AGTGCAGACTTGGTCGTGTTGGGTGCTTTTTATGG-AACGGGT--AAGATGGGTAATCGA 5151 Query 121202 TCAA---TATTTTTAATGGGGTGTTATGATAATGAAAGTAATAATTGGAAAACTGTAACT 121258 | | | ||||||||||| ||||||||| | || |||| ||||| || || || Sbjct 5152 TTTAGTATCTTTTTAATGGGATGTTATGATGAGAAATGTAAAGTATGGAAGACAGTCACA 5211 Query 121259 AAA 121261 ||| Sbjct 5212 AAA 5214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479550038901800