Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq9081 315 7e-81 >seq9081 Length=2203 Score = 315 bits (348), Expect = 7e-81 Identities = 571/829 (69%), Gaps = 10/829 (1%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||||||||| | ||| || |||||| |||||||| || || || ||||| || | Sbjct 48 TTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAAT 107 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAAT 13488 |||||||| |||||||||| | | || | || || ||| || | ||| |||| Sbjct 108 TCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAAT 167 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548 || ||| || | || ||||| |||| ||||||||||||||||||||| || | | Sbjct 168 AAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATC 227 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 ||||| |||| | | ||| |||||||| ||||| || |||||||| | | ||| Sbjct 228 TTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTC---TGTGATA 284 Query 13609 ATCTTAATAA---TGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 || | || || || || | || | | |||||||| | ||||| || ||| Sbjct 285 ATTTCAACAACTCGTTCTTTTGGTGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCA 344 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || |||| |||||| || || ||||| ||||||||| ||||| ||||| || |||||| Sbjct 345 AAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGC 404 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || ||||| || || || | |||||| ||||| || || ||| |||||| || ||| Sbjct 405 ATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCC 464 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCAT 13845 || || |||||||| || || | |||||| ||||| ||| | || | |||||||| Sbjct 465 TCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAA 524 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 ||| ||||| || | ||||| || | | | || || || ||||||||||| Sbjct 525 TTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGAATAAG 584 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATTTCAGA 13964 || || || | | || || || ||||| || || | | ||||| || || Sbjct 585 AAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAG-AATCGAGTACATCTCTGA 643 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 ||||| ||||| ||||| || || || |||||||| ||| |||||||| ||| || Sbjct 644 GTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAAC 703 Query 14025 CTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 ||| || | |||| ||| ||||| ||||| ||||| || || || ||||| | Sbjct 704 TTCCTGACT-GAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGA 762 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTA 14143 |||| |||| || | ||||||| | ||| || || | ||||| ||| || | Sbjct 763 ATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTCA 822 Query 14144 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 ||| || || | ||| ||||| || |||||||| || || || |||| Sbjct 823 TATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTTCAGC 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478411261502280