Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5596 419 3e-112 seq9081 246 4e-60 >seq5596 Length=16775 Score = 419 bits (464), Expect = 3e-112 Identities = 1077/1633 (66%), Gaps = 31/1633 (2%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 ||||| ||||| | | | || ||||| || | || || ||||| || ||||| || Sbjct 11259 GTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTTTTAAGT 11318 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || | ||||||| |||||||| ||| || | ||| ||| | || || |||| Sbjct 11319 CCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCCGCTACA 11378 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 |||||||| | || |||||||||||||| || ||||| | || || ||||||| || Sbjct 11379 TGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCATTTGAATT 11438 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 ||||| | |||||||| | |||||||||| |||||||| || |||| Sbjct 11439 TGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCATCAGGAA-- 11496 Query 71041 TTTG-----TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCAT 71095 ||| || || || || ||| || | ||||||| ||| || || || |||| Sbjct 11497 TTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCATGTCATCAT 11556 Query 71096 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTC 71155 |||||| | || || ||| | ||| |||||| ||||||| |||||||| |||| Sbjct 11557 CCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTTGAAACTCTC 11616 Query 71156 CAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTC 71215 || | || | |||| | |||| |||||| || |||||||| | ||||||||| | Sbjct 11617 CACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCTCATTATTAC 11676 Query 71216 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275 | ||||| ||||| ||||||||||| ||||| ||||| | || | ||| | ||||| Sbjct 11677 CTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAATTACGAAGAC 11736 Query 71276 CATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNN 71335 || |||||| ||||||| | |||||||| ||| | || | |||| Sbjct 11737 CAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTGGTGTCTTTT 11796 Query 71336 NNNNNNNNNNNNNNNNNNNNATGCC-GTTACTAGCGTATGATCCTGCATATGTATCGTAT 71394 || || || || | | ||||| |||| || || || Sbjct 11797 CCCACATATCATATTGTAATATACCTTTTGATACTGGA-CATCCTTCATACGTCTCATAA 11855 Query 71395 GGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCG 71454 | ||| |||||| || | |||||| |||| |||||| |||||||||||||| || || Sbjct 11856 GTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATAAATTGTCTCA 11915 Query 71455 AAAATCTTCTTATTGAGATCTTGTGCTTC--CGGGCTATCAAATGGATAATTTAAGAGAA 71512 || || | | ||| | || ||||| | | | || |||| | | | | Sbjct 11916 AATATTTGTTGATTTAATAATTTAGCTTCATCAGAC--TCGTATGGCATTCTCATCAATA 11973 Query 71513 TAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAA 71572 |||| || || ||||||||||||| ||||| ||||| || | ||||| || || Sbjct 11974 TAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAAAGTTTGATC 12033 Query 71573 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGA 71629 || ||||||| || ||||| |||||| || ||||||||||| | ||||| ||| Sbjct 12034 GTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAATTTCTTGTGA 12093 Query 71630 CTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCT---ATTA 71683 |||| ||||| || ||||| | ||| | |||||| | | | | || | | | Sbjct 12094 CTAT--CTTTG-TGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATTTGGCTTGA 12150 Query 71684 CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCAT 71743 |||||| || ||||||| ||||| | |||||| || || || |||| | | || Sbjct 12151 CAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTTACTTGAAT 12210 Query 71744 ATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 71803 |||| | ||||||||| || | ||| || ||| ||||| | ||| |||||||| | Sbjct 12211 ATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGATT-C 12269 Query 71804 TCTTTTTG-TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||| | ||||| ||||||||||| || ||| | || || || || |||| |||||| Sbjct 12270 GATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAACTTGAGAT 12329 Query 71863 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT 71922 || ||||| || ||| | || | ||||||| | | | ||| |||| | Sbjct 12330 TCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTCCTTCTGCT 12389 Query 71923 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACAT 71982 || ||| | |||||| ||| || || | || ||| | | | || ||||| Sbjct 12390 TCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGACCTGGACAG 12449 Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 || |||||||| || |||||| | ||| | | || |||| |||||| | ||| Sbjct 12450 CTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAACAAGTCA 12509 Query 72043 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 72102 |||||||| | ||| ||| | |||||| | | | || || ||||| ||||| || Sbjct 12510 GGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATTTTTC 12569 Query 72103 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 72162 || | ||| || ||| | | || ||| |||||| |||||||| || | || | | Sbjct 12570 TTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAATGCA 12629 Query 72163 CCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 72222 || || ||||| || || || ||||| | || | || || ||||| |||||||||||| Sbjct 12630 CCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAACTCTCAAC 12689 Query 72223 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 72282 || || | | |||||| || ||||| || || | ||||| | || | | |||| Sbjct 12690 ATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTTTGAACGA 12749 Query 72283 AT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 72340 || | || ||| | || ||||| ||||| ||| |||| |||||| | | Sbjct 12750 ATACAATGAACATT--AACGCCAATTCCACCTGCTGATTTGCTAATTAGCGCGCATTGCT 12807 Query 72341 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 72400 |||| || ||||| || ||||| || ||||| ||| || ||||| || || Sbjct 12808 TTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAGAAGAAAGCATGAAG 12867 Query 72401 ACATTTGGTGACG 72413 ||| ||| |||| Sbjct 12868 ACAATTGAGGACG 12880 Score = 183 bits (202), Expect = 4e-41 Identities = 325/467 (70%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 72461 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTA 72520 ||||||||| |||||||| ||||||||||||| || |||||| | ||| || || | Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050 Query 72521 CCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 72580 | || || | ||| | |||||| || || | ||| | || || || || || |||| Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110 Query 72581 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 72640 ||| | ||| || |||||||||||||||||||||||| || ||||| || || | Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170 Query 72641 TAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTG-AA 72699 | ||| | ||||| ||| ||| || ||| ||| || | ||| || | | | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCT-TATGATGGAATTCGCTA 13229 Query 72700 ATAATCGGAGAAT--GT-TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 72756 || || || || | || || || || | || |||| || | | ||| ||||| Sbjct 13230 ATCATTGGGGATTTAGTCTTTAGATATTCA--TTTTCCATA-TTATAAAGATCATCCATG 13286 Query 72757 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 72816 ||||||||||| |||| || || || ||||| || || || | ||| ||||| || ||| Sbjct 13287 ACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCAGCT 13346 Query 72817 AGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTG 72876 | || |||||||||| ||| | |||||| || |||||| |||| ||||| | | | Sbjct 13347 AAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAATTA 13406 Query 72877 TCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 |||| ||| ||||||||||| |||| | || | ||| || || Sbjct 13407 TCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTT 13453 >seq9081 Length=2203 Score = 246 bits (272), Expect = 4e-60 Identities = 571/849 (67%), Gaps = 19/849 (2%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| ||||| | ||||| ||||| || || | ||| || || |||||||| || Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCC 92 Query 41819 TCCAATGATATATTTTCCATGAAATCA-AACGGATTGGTAACATTATAAAtttttttAAA 41877 || | ||| || |||||| |||| | || ||||| | |||||| | || | || Sbjct 93 TCAAGTGAAATTAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAG 151 Query 41878 TCCCAATTCAGA-AATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCAC 41936 ||||||||| ||| ||| ||| || | |||||| || ||| ||| | |||| Sbjct 152 TCCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCAC 210 Query 41937 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 41996 ||||||| || | | || |||||||| || |||| | |||||| | |||||| | Sbjct 211 AATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTA 270 Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC--AATAA-ATGTT 42053 | || ||||| ||||| ||| ||||| | ||||| | | ||||| ||||| Sbjct 271 CAGCCTCTGTGATAATTTCAACAACTCGTTCTT---TTGGTGGCTTCTGAATAAGATGTT 327 Query 42054 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113 | |||| || ||||| || || | || || || || ||||| ||| | ||| || | Sbjct 328 TGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTG 387 Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATC 42173 | || || | || ||||||| |||||||| |||| |||||| || | ||||| || Sbjct 388 AGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTC 447 Query 42174 CAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 42233 || |||||| || || || || || ||||||||||||| || || ||| | ||| Sbjct 448 CACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCAT 507 Query 42234 TGTCA-TG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 42290 | | || |||||| ||| ||||| || ||||| || ||||| || || | || | Sbjct 508 GCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCT 567 Query 42291 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAA 42350 | || ||||| || | ||| | || ||| | ||| || || || | || Sbjct 568 CAATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAA 627 Query 42351 GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGG 42410 ||||| ||||| || | ||||| || || || || ||||| || || ||| | Sbjct 628 TCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAG 687 Query 42411 CCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470 | || || || || ||||| || ||||||||| ||| || || || || || |||| Sbjct 688 CTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGT 747 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTCCGGTGTTA 42527 | || ||||| || || ||||| ||| ||||| | || | ||| ||| Sbjct 748 CTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCC---TTTA 804 Query 42528 ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 |||| | ||| ||| | |||||||| |||| ||| |||||||| || ||||| || || Sbjct 805 ATTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTG 864 Query 42588 CTTCTGCCT 42596 |||| |||| Sbjct 865 CTTCAGCCT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670890232524520