Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 419 3e-112
seq9081 246 4e-60
>seq5596
Length=16775
Score = 419 bits (464), Expect = 3e-112
Identities = 1077/1633 (66%), Gaps = 31/1633 (2%)
Strand=Plus/Plus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
||||| ||||| | | | || ||||| || | || || ||||| || ||||| ||
Sbjct 11259 GTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTTTTAAGT 11318
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920
|| | ||||||| |||||||| ||| || | ||| ||| | || || ||||
Sbjct 11319 CCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCCGCTACA 11378
Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980
|||||||| | || |||||||||||||| || ||||| | || || ||||||| ||
Sbjct 11379 TGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCATTTGAATT 11438
Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040
||||| | |||||||| | |||||||||| |||||||| || ||||
Sbjct 11439 TGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCATCAGGAA-- 11496
Query 71041 TTTG-----TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCAT 71095
||| || || || || ||| || | ||||||| ||| || || || ||||
Sbjct 11497 TTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCATGTCATCAT 11556
Query 71096 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTC 71155
|||||| | || || ||| | ||| |||||| ||||||| |||||||| ||||
Sbjct 11557 CCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTTGAAACTCTC 11616
Query 71156 CAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTC 71215
|| | || | |||| | |||| |||||| || |||||||| | ||||||||| |
Sbjct 11617 CACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCTCATTATTAC 11676
Query 71216 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275
| ||||| ||||| ||||||||||| ||||| ||||| | || | ||| | |||||
Sbjct 11677 CTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAATTACGAAGAC 11736
Query 71276 CATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNN 71335
|| |||||| ||||||| | |||||||| ||| | || | ||||
Sbjct 11737 CAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTGGTGTCTTTT 11796
Query 71336 NNNNNNNNNNNNNNNNNNNNATGCC-GTTACTAGCGTATGATCCTGCATATGTATCGTAT 71394
|| || || || | | ||||| |||| || || ||
Sbjct 11797 CCCACATATCATATTGTAATATACCTTTTGATACTGGA-CATCCTTCATACGTCTCATAA 11855
Query 71395 GGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCG 71454
| ||| |||||| || | |||||| |||| |||||| |||||||||||||| || ||
Sbjct 11856 GTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATAAATTGTCTCA 11915
Query 71455 AAAATCTTCTTATTGAGATCTTGTGCTTC--CGGGCTATCAAATGGATAATTTAAGAGAA 71512
|| || | | ||| | || ||||| | | | || |||| | | | |
Sbjct 11916 AATATTTGTTGATTTAATAATTTAGCTTCATCAGAC--TCGTATGGCATTCTCATCAATA 11973
Query 71513 TAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAA 71572
|||| || || ||||||||||||| ||||| ||||| || | ||||| || ||
Sbjct 11974 TAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAAAGTTTGATC 12033
Query 71573 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGA 71629
|| ||||||| || ||||| |||||| || ||||||||||| | ||||| |||
Sbjct 12034 GTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAATTTCTTGTGA 12093
Query 71630 CTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCT---ATTA 71683
|||| ||||| || ||||| | ||| | |||||| | | | | || | | |
Sbjct 12094 CTAT--CTTTG-TGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATTTGGCTTGA 12150
Query 71684 CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCAT 71743
|||||| || ||||||| ||||| | |||||| || || || |||| | | ||
Sbjct 12151 CAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTTACTTGAAT 12210
Query 71744 ATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 71803
|||| | ||||||||| || | ||| || ||| ||||| | ||| |||||||| |
Sbjct 12211 ATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGATT-C 12269
Query 71804 TCTTTTTG-TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862
||| | ||||| ||||||||||| || ||| | || || || || |||| ||||||
Sbjct 12270 GATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAACTTGAGAT 12329
Query 71863 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT 71922
|| ||||| || ||| | || | ||||||| | | | ||| |||| |
Sbjct 12330 TCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTCCTTCTGCT 12389
Query 71923 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACAT 71982
|| ||| | |||||| ||| || || | || ||| | | | || |||||
Sbjct 12390 TCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGACCTGGACAG 12449
Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042
|| |||||||| || |||||| | ||| | | || |||| |||||| | |||
Sbjct 12450 CTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAACAAGTCA 12509
Query 72043 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 72102
|||||||| | ||| ||| | |||||| | | | || || ||||| ||||| ||
Sbjct 12510 GGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATTTTTC 12569
Query 72103 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 72162
|| | ||| || ||| | | || ||| |||||| |||||||| || | || | |
Sbjct 12570 TTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAATGCA 12629
Query 72163 CCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 72222
|| || ||||| || || || ||||| | || | || || ||||| ||||||||||||
Sbjct 12630 CCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAACTCTCAAC 12689
Query 72223 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 72282
|| || | | |||||| || ||||| || || | ||||| | || | | ||||
Sbjct 12690 ATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTTTGAACGA 12749
Query 72283 AT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 72340
|| | || ||| | || ||||| ||||| ||| |||| |||||| | |
Sbjct 12750 ATACAATGAACATT--AACGCCAATTCCACCTGCTGATTTGCTAATTAGCGCGCATTGCT 12807
Query 72341 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 72400
|||| || ||||| || ||||| || ||||| ||| || ||||| || ||
Sbjct 12808 TTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAGAAGAAAGCATGAAG 12867
Query 72401 ACATTTGGTGACG 72413
||| ||| ||||
Sbjct 12868 ACAATTGAGGACG 12880
Score = 183 bits (202), Expect = 4e-41
Identities = 325/467 (70%), Gaps = 8/467 (2%)
Strand=Plus/Plus
Query 72461 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTA 72520
||||||||| |||||||| ||||||||||||| || |||||| | ||| || || |
Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050
Query 72521 CCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 72580
| || || | ||| | |||||| || || | ||| | || || || || || ||||
Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110
Query 72581 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 72640
||| | ||| || |||||||||||||||||||||||| || ||||| || || |
Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170
Query 72641 TAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTG-AA 72699
| ||| | ||||| ||| ||| || ||| ||| || | ||| || | | | |
Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCT-TATGATGGAATTCGCTA 13229
Query 72700 ATAATCGGAGAAT--GT-TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 72756
|| || || || | || || || || | || |||| || | | ||| |||||
Sbjct 13230 ATCATTGGGGATTTAGTCTTTAGATATTCA--TTTTCCATA-TTATAAAGATCATCCATG 13286
Query 72757 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 72816
||||||||||| |||| || || || ||||| || || || | ||| ||||| || |||
Sbjct 13287 ACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCAGCT 13346
Query 72817 AGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTG 72876
| || |||||||||| ||| | |||||| || |||||| |||| ||||| | | |
Sbjct 13347 AAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAATTA 13406
Query 72877 TCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 72923
|||| ||| ||||||||||| |||| | || | ||| || ||
Sbjct 13407 TCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTT 13453
>seq9081
Length=2203
Score = 246 bits (272), Expect = 4e-60
Identities = 571/849 (67%), Gaps = 19/849 (2%)
Strand=Plus/Plus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| ||||| | ||||| ||||| || || | ||| || || |||||||| ||
Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCC 92
Query 41819 TCCAATGATATATTTTCCATGAAATCA-AACGGATTGGTAACATTATAAAtttttttAAA 41877
|| | ||| || |||||| |||| | || ||||| | |||||| | || | ||
Sbjct 93 TCAAGTGAAATTAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAG 151
Query 41878 TCCCAATTCAGA-AATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCAC 41936
||||||||| ||| ||| ||| || | |||||| || ||| ||| | ||||
Sbjct 152 TCCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCAC 210
Query 41937 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 41996
||||||| || | | || |||||||| || |||| | |||||| | |||||| |
Sbjct 211 AATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTA 270
Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC--AATAA-ATGTT 42053
| || ||||| ||||| ||| ||||| | ||||| | | ||||| |||||
Sbjct 271 CAGCCTCTGTGATAATTTCAACAACTCGTTCTT---TTGGTGGCTTCTGAATAAGATGTT 327
Query 42054 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113
| |||| || ||||| || || | || || || || ||||| ||| | ||| || |
Sbjct 328 TGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTG 387
Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATC 42173
| || || | || ||||||| |||||||| |||| |||||| || | ||||| ||
Sbjct 388 AGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTC 447
Query 42174 CAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 42233
|| |||||| || || || || || ||||||||||||| || || ||| | |||
Sbjct 448 CACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCAT 507
Query 42234 TGTCA-TG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 42290
| | || |||||| ||| ||||| || ||||| || ||||| || || | || |
Sbjct 508 GCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCT 567
Query 42291 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAA 42350
| || ||||| || | ||| | || ||| | ||| || || || | ||
Sbjct 568 CAATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAA 627
Query 42351 GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGG 42410
||||| ||||| || | ||||| || || || || ||||| || || ||| |
Sbjct 628 TCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAG 687
Query 42411 CCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470
| || || || || ||||| || ||||||||| ||| || || || || || ||||
Sbjct 688 CTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGT 747
Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTCCGGTGTTA 42527
| || ||||| || || ||||| ||| ||||| | || | ||| |||
Sbjct 748 CTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCC---TTTA 804
Query 42528 ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587
|||| | ||| ||| | |||||||| |||| ||| |||||||| || ||||| || ||
Sbjct 805 ATTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTG 864
Query 42588 CTTCTGCCT 42596
|||| ||||
Sbjct 865 CTTCAGCCT 873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670890232524520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |