Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3668 125 7e-24 seq5596 116 4e-21 >seq3668 Length=32275 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| ||||| | ||| ||||| ||||| || ||||| || ||| Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| | |||||||||||| |||| | |||||| ||||| || || Sbjct 30840 AATGTACGTCCA-TCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 30782 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| || ||| || | | ||| | ||||| | || || || Sbjct 30781 AATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAAC 30722 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || || || || |||||||| ||||| |||||||| Sbjct 30721 TTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674 >seq5596 Length=16775 Score = 116 bits (128), Expect = 4e-21 Identities = 605/951 (64%), Gaps = 56/951 (6%) Strand=Plus/Plus Query 156494 TTGACAACTTGAAATTCGCCCGACAAA--ACACGTC--TCAAAAACAAATTACT-GTGAA 156548 || ||||||||||| || || || || ||||| | | | ||||| ||||| ||| | Sbjct 11598 TTAACAACTTGAAACTCTCC--ACTAAGCACACGACGATTATAAACA--TTACTTGTGTA 11653 Query 156549 ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACG 156608 ||||||||| ||| || || | || || || || | || || ||||| | Sbjct 11654 -CGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTG 11712 Query 156609 CCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGT 156668 | | | |||||||||||| | || | || | || ||| ||| || | ||| | Sbjct 11713 CTAATAACAATGAATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAAT 11772 Query 156669 CCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTT 156728 |||| || ||| ||| | | | ||||| ||| ||||| ||||| |||| | Sbjct 11773 CCCACAAGTCAGTTGGTGTCTTTTCCCACATATCATATTGTAATATACCTT--------T 11824 Query 156729 TGCTACCGGCAAACGTGCTATAAGGCTCACTAAC-----AGAT-----GCCAGTTCGTAA 156778 || ||| || | | | | ||| | |||| ||| || | |||| ||| | Sbjct 11825 TGATACTGGACATCCTTC-ATACGTCTCA-TAAGTTCCAAGTTTTTCAGCCAATTCACAG 11882 Query 156779 CTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCA 156838 || | ||| | || ||| ||| | || ||| ||||||| ||| |||| || Sbjct 11883 CTCGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCT 11942 Query 156839 GCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCA 156898 |||| | |||| || || | || || | ||| ||||| || || |||||||| ||| Sbjct 11943 TCATCAGACTCGTATGGCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCA 12002 Query 156899 ATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTG 156958 || ||||| |||||||| | | || ||| ||| || ||||| || |||||||| Sbjct 12003 ATTCCGATTGGACGATGTCTAAAGTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTA 12062 Query 156959 CGATCAATAATTTTATTCAAA---CTATCCACTACATGTTTGACCACAGTGTGCAATAGT 157015 |||||||||||||| ||| || |||| | | |||| | | |||| Sbjct 12063 ACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTC---CTTCAATTTA 12119 Query 157016 TGAAAATCAAA---AGTATCATT---ATTGATATATTTATTGACGGCAATCGACGCTAGA 157069 || |||||| | || ||| |||| | | |||| | |||||| || |||| | Sbjct 12120 TGGAAATCATATTCTTTACGATTTGGCTTGACAAACATATTTAAGGCAATTGATGCTAAA 12179 Query 157070 TTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTG 157129 ||||| || ||| ||| || ||||||| || ||||| | ||| ||||| | Sbjct 12180 TTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACATAAATTTGAG 12239 Query 157130 CATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAAC 157189 || || ||| ||| |||||| ||| || || || || ||||| || | | Sbjct 12240 CAACGGATTGTTCCAAGATTCTGTTGATTCGATTTACGATTACATGCATCCTTATACAGC 12299 Query 157190 ATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGC---GCATTAATGTAACC 157246 || || ||||| || || || ||||| ||| || | |||| ||| ||| | Sbjct 12300 ATATAAGGTGTTCCTGTCTCAACTTGAGATTCAATAA--TTGCAAACCATAAAT-----C 12352 Query 157247 GCGGGCATTTGCTCG-CG---AAACTGGCCTTTATCCTCGTAATGTTTGTACCAGTATTC 157302 | || ||| || | || ||| | |||| | || || | | || | ||| Sbjct 12353 TTGTGCCTTTACTTGACGAATAAATCGTCCTTCTGCTTCATATCGAATATATAGATTTTC 12412 Query 157303 AAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCA 157362 ||| || | |||||| || || | || ||||| | |||||||||||| ||||| Sbjct 12413 AAATTCTTTACCATAAGTCTCATAAAGACCTGGACAGCTATGAGGACACATTAAAGACCA 12472 Query 157363 TATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGC 157413 || | || | |||||| |||| |||||| | || |||| ||||||||| Sbjct 12473 CATTTCATTGTTTTCAACACGTTGCATAAACAAGTCAGGAATCCATAAAGC 12523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506826316670640