Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3947 111 2e-19 seq5596 84.2 3e-11 >seq3947 Length=2916 Score = 111 bits (122), Expect = 2e-19 Identities = 236/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTT 70285 |||||||| | ||| | | ||||||||||| ||||| ||||| ||| ||| |||||| Sbjct 1281 TGGAATCCAGTGGATATTCCACAAATGGCACTTCCACCATGTCATTGTCTGGTACAGTTT 1340 Query 70286 TA-CTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344 || ||| | ||||| | ||| ||| | | || || || || || ||||| || Sbjct 1341 TATGTCGCA-AATGGCGAGTTGAGTTGCCAATTATACCAAAGATCAGCTGATATGGGTCT 1399 Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 ||| || || ||||| || ||| || || | |||||| ||||||||||||| |||| Sbjct 1400 CGGAGTTCCTTTTAATATCGCATCATACGCTCTATTGACGTACATGATTGCTCATGTTAC 1459 Query 70405 CGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTA----A 70460 | || | ||| || || || || |||| || ||||| |||||| | Sbjct 1460 AAATTTAAAGCCTGGCGATTTTGTTCATACTTTTGGTGATGCTCA----TATTTACACGA 1515 Query 70461 ATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGG 70520 ||||||| ||||| | || | |||||||||||| | || | || || || |||| Sbjct 1516 ATCACATTGAGCCTCTCAAAGAGCAACTCGAACGCAACCCTCGTCCATTCCCACAGCTAA 1575 Query 70521 AGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTT 70569 | | ||| ||||| ||||| || ||||||| |||||||| Sbjct 1576 AAATCAAGCGTCAAGTTCCTAATATCGATGACTTTAAGTTTGAAGATTT 1624 >seq5596 Length=16775 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGG 96883 ||| || || || ||| | ||| | |||||| | |||| || ||| || || || Sbjct 12704 TGGTCTCGTACCTATGTTGAGAGTTTACAATAATACAGCACGTTATGTTGATCAAGGTGG 12645 Query 96884 CAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGA 96943 |||||||| || || || | || ||||| |||||||||||||| | || |||||||| Sbjct 12644 TAATAAACGTCCTGGTGCATTTGCAGTCTATTTGGAACCTTGGCATGGAGATGTTTTTGA 12585 Query 96944 CTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTA 97003 ||| | || | ||||| |||| ||||| | || || || || ||||||| Sbjct 12584 GTTTCTAGATTTAAAGAAAAATACTGGAAAAGAAGAAGTTCGTGCTAGAGATATGTTTTA 12525 Query 97004 TGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT 97039 ||| | ||| | || || ||||| ||| | || || Sbjct 12524 TGCTTTATGGATTCCTGACTTGTTTATGCAACGTGT 12489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740784294826520