Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3668 113 3e-20 seq8363 107 1e-18 >seq3668 Length=32275 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | || || || ||||| || ||||| || || | | | | ||||| Sbjct 30883 AACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTC 30824 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| |||||| | || ||||||||||| || |||||||||||||||||| Sbjct 30823 CAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTG 30764 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || ||||| ||| ||| |||| || || || | || || || || || ||||||| Sbjct 30763 GATCTTTGC-CTTGACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTT 30705 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||| || | ||||| || || |||||||| || Sbjct 30704 TACCAGTTAATGTTTTGACGAAGATTTGCATCTT 30671 >seq8363 Length=52898 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || ||||| ||||| || || ||||| || || ||||| ||||| | | | | || Sbjct 26344 AACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCC 26403 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 ||||||||||| || || | ||||| |||||||| || |||||||||||||| || Sbjct 26404 TCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCT 26463 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGT 15330 |||||| ||| ||| |||| || || || | || || || || | |||||| || Sbjct 26464 TGAATTTTAGCCTTAACATTTTCAATCGTGTC-CGATGGCTCGACTTCGAGGGTAATTGT 26522 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||| ||||| || || || ||||| Sbjct 26523 CTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362048203971057