Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3668 104 1e-17 >seq3668 Length=32275 Score = 104 bits (114), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||| || || ||||| |||||||| ||| ||| | || || ||| Sbjct 30882 ACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCC 30823 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 ||||| || ||| || ||||||||||| || || | || || |||||||| || | Sbjct 30822 AATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 30763 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || ||||| || | ||| |||| ||| || ||| Sbjct 30762 ATCTTTGCC---TTGACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTT 30706 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATG 33376 || || || | ||||| ||||| |||||||| || ||| Sbjct 30705 TTACCAGTTAATGTTTTGACGAAGATTTGCATCTTGATG 30667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318662301827946