Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq7918 158 1e-33 >seq7918 Length=32631 Score = 158 bits (174), Expect = 1e-33 Identities = 290/419 (69%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 135788 CAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTT 135847 ||| || || | |||||| || ||||| ||||| || | || || || || || ||| Sbjct 18035 CAGTTTGTTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCG 18094 Query 135848 ATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGT 135907 |||||| |||||||| | ||| ||| | || |||||| | || || |||| || Sbjct 18095 ATTGTTTTTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGT 18154 Query 135908 CGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTT 135967 || || || || || | ||||||||| ||||| || || ||||| || || |||||||| Sbjct 18155 AGCGGCTCCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTT 18214 Query 135968 CCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCC-CGATCTTAGAT-CCTTCC 136025 | || || ||| ||| |||||| | ||||| ||| ||| | | ||| Sbjct 18215 GTAAAAAGGAATACAGCCGGTATGAAAGGCCTCACC--GCCGCGAATGGGGCTGCCTAAG 18272 Query 136026 GCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTA-ATATACTTGATGAT 136084 ||||| ||| | || || || || || || || ||||| ||| | | || || | || Sbjct 18273 GCGCGGATCTTGCCGGCATTAATCCCAATACCGGCACG-TTGAGAGACGTATTTCACAAT 18331 Query 136085 TGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCACGA 136144 ||| | || || | |||||| | || || ||| || || | ||| || || Sbjct 18332 GGCACTGGCGGTGGCATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGA 18391 Query 136145 ACTAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGATTT 136203 |||||||| || ||||| ||||| |||||||||||||||||||||||||| || |||| Sbjct 18392 GCTAAATTGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAATTT 18450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524534944995760