Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq8363 114 9e-21
seq3668 89.7 4e-13
>seq8363
Length=52898
Score = 114 bits (126), Expect = 9e-21
Identities = 158/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
||||| || || || || |||||| |||||||| || ||| | ||| || ||||
Sbjct 26344 AACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCC 26403
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
|| |||||||| || ||||| ||||| ||||| || || |||| | ||||||||||||
Sbjct 26404 TCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCT 26463
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
|||||| || || | ||| || || | ||||| || |||| ||||||||
Sbjct 26464 TGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTC 26523
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCT 44130
||||| || || || || || || || |||||| || |||
Sbjct 26524 TTACCCGTCAAGGTTTTGACGAAGATCTGCATGGTGAATCT 26564
>seq3668
Length=32275
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||||||| | || || ||||| ||||| || || | ||| ||| |||| |||
Sbjct 30882 ACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCC 30823
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
|||||||| || || || || || ||||| || || | || | |||||||| |||
Sbjct 30822 AATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 30763
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| ||| ||||| | | | ||| || | ||||| || || | || || ||||||
Sbjct 30762 ATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTTA 30703
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| ||||| || || || || ||||||||
Sbjct 30702 CCAGTTAATGTTTTGACGAAGATTTGCAT 30674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354649281044196
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |