Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq29526 95.1 1e-14 >seq29526 Length=4968 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 7013 ACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAAC 7072 || ||||| |||||||| ||||| || ||||| ||||| || || || || || ||| Sbjct 975 ACCGCCTGATTTGCTTGCGAACCAGAGTGAGGCTGAACATTAGCAAATTTAACACCAAAT 916 Query 7073 AGTTCTT-TAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCC 7131 |||| |||| | || || || || || || ||| ||| | | | | ||||| | Sbjct 915 AGTTTACATAGC-CTATCTATAGCAAGATTTTCAATTCTATCAACATGTTCACAGCCACA 857 Query 7132 ATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGC 7191 ||||| | ||| || | ||| || || ||||| ||||| || || ||||||||||| || Sbjct 856 GTAATATCTTTTACCTGAATAACCTTCTGCATATTTGTTAGTTAAGATAGAACCCTGAGC 797 Query 7192 TTTCATAACATCGTCTGAC--ACATAGTTTTCGGACGCAATCAA 7233 || ||| || | ||| || || | |||||||| ||||| || Sbjct 796 TTCCATTAC-TGCTCT-ACTTGCAAAATTTTCGGATGCAATTAA 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555157181078920