Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq9081 230 2e-55
>seq9081
Length=2203
Score = 230 bits (254), Expect = 2e-55
Identities = 547/817 (67%), Gaps = 10/817 (1%)
Strand=Plus/Plus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
||||||||||||| ||| || |||||| ||||| || || || || | ||||| |
Sbjct 48 TTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAAT 107
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979
|||||||| ||| |||||||| | | |||| || | | || ||||| |||
Sbjct 108 TCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAAT 167
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
|| || || || || || ||||| | |||||||||||| ||||| || | |
Sbjct 168 AAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATC 227
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099
||||| || | || || || ||||| | ||||| || | || || || | | ||
Sbjct 228 TTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAATT 287
Query 13100 TCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATGCTTAAACATCATACATGCA 13156
|| | | |||||| | ||| || || ||| ||||| || |||| | ||||||
Sbjct 288 TCAACAACT-CGTTCTTT--TGGTGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCA 344
Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216
|| |||| || | |||||| ||||| || || || ||||| ||||| | ||| |||
Sbjct 345 AAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGC 404
Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276
|| | || || || ||||||||||| || || ||||| || ||| || || ||
Sbjct 405 ATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCC 464
Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCAC 13336
|| || || ||||| || || | | ||||||| | | || ||||| ||||||
Sbjct 465 TCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAA 524
Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396
||| |||||||| ||| |||| || ||||| | | | || || || || |||||
Sbjct 525 TTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGAATAAG 584
Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACATTTCTGA 13455
| | | ||| || |||||||| || || | || | | ||||| |||||
Sbjct 585 AAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAAT-TAGAATCGAGTACATCTCTGA 643
Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515
|| | ||||||||| || |||||||| |||||||| ||| ||| |||| ||| |||||
Sbjct 644 GTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAAC 703
Query 13516 TT-CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574
|| | || | |||| ||| |||||| || || || || ||||| |||||||| |
Sbjct 704 TTCCTGACT-GAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGA 762
Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAA 13634
| || | || ||| ||||| | ||| || || ||| ||| || |
Sbjct 763 ATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTCA 822
Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671
||||||||||||||| || || || || ||||| ||
Sbjct 823 TATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430826518649154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |