Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq9081 230 2e-55 >seq9081 Length=2203 Score = 230 bits (254), Expect = 2e-55 Identities = 547/817 (67%), Gaps = 10/817 (1%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||||||||||| ||| || |||||| ||||| || || || || | ||||| | Sbjct 48 TTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAAT 107 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 |||||||| ||| |||||||| | | |||| || | | || ||||| ||| Sbjct 108 TCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAAT 167 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 || || || || || || ||||| | |||||||||||| ||||| || | | Sbjct 168 AAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATC 227 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 ||||| || | || || || ||||| | ||||| || | || || || | | || Sbjct 228 TTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAATT 287 Query 13100 TCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATGCTTAAACATCATACATGCA 13156 || | | |||||| | ||| || || ||| ||||| || |||| | |||||| Sbjct 288 TCAACAACT-CGTTCTTT--TGGTGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCA 344 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 || |||| || | |||||| ||||| || || || ||||| ||||| | ||| ||| Sbjct 345 AAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGC 404 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 || | || || || ||||||||||| || || ||||| || ||| || || || Sbjct 405 ATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCC 464 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCAC 13336 || || || ||||| || || | | ||||||| | | || ||||| |||||| Sbjct 465 TCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAA 524 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 ||| |||||||| ||| |||| || ||||| | | | || || || || ||||| Sbjct 525 TTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATAGCATTGAATAAG 584 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACATTTCTGA 13455 | | | ||| || |||||||| || || | || | | ||||| ||||| Sbjct 585 AAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAAT-TAGAATCGAGTACATCTCTGA 643 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 || | ||||||||| || |||||||| |||||||| ||| ||| |||| ||| ||||| Sbjct 644 GTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAAC 703 Query 13516 TT-CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 || | || | |||| ||| |||||| || || || || ||||| |||||||| | Sbjct 704 TTCCTGACT-GAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGA 762 Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAA 13634 | || | || ||| ||||| | ||| || || ||| ||| || | Sbjct 763 ATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTCA 822 Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 ||||||||||||||| || || || || ||||| || Sbjct 823 TATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430826518649154