Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq3668 138 3e-27
seq8363 129 1e-24
seq5242 91.5 3e-13
>seq3668
Length=32275
Score = 138 bits (152), Expect = 3e-27
Identities = 182/250 (73%), Gaps = 2/250 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| ||||| ||||| || || ||||| |||||| | || | || ||
Sbjct 30886 AAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATC 30827
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| | |||||| ||||| || |||| | |||||||| || || ||||||||||| ||
Sbjct 30826 TTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 30767
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| |||||||| || |||||||| | || || ||| || || || | || || ||
Sbjct 30766 TTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGT 30707
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG-TGTACAGTATTTATTAGAGTAA 104585
|||||||| | |||||| || || || ||||| ||| ||||| || | ||||||
Sbjct 30706 TTTACCAGTTAATGTTTTGACGAAGATTTGCATCTTGATGTACCTTAAAAAAATGAGTAA 30647
Query 104586 T-AATTATTT 104594
| ||||||||
Sbjct 30646 TAAATTATTT 30637
>seq8363
Length=52898
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||| || | ||| || |||||||||||||| ||||| | || | || || |||
Sbjct 26347 ACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCT 26406
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
| |||||| || ||||| || | | |||||||| ||||| |||||||||||||| |||
Sbjct 26407 AATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGA 26466
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
|| || || || |||||||| | || || || || || || || ||||| ||||||
Sbjct 26467 ATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTTA 26526
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | ||||| || || ||||||||
Sbjct 26527 CCCGTCAAGGTTTTGACGAAGATCTGCAT 26555
>seq5242
Length=62730
Score = 91.5 bits (100), Expect = 3e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 238576 AAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGC 238635
||||||| ||| |||||||| || || || |||||| || |||||||||||
Sbjct 10536 AAACTCATGATGATTTATGGAATAGTGCACAAATTCAAATGACAAAGGAAGGCAAAATGC 10477
Query 238636 ATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGG 238695
| | || || |||||||||||||| |||||||| | |||||||| ||| ||| | |
Sbjct 10476 ACGGATTTTTGCGAATGTATTGGGCAAAAAAGATTTTAGAATGGACGGCATCGCCAGAAG 10417
Query 238696 AAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCT 238754
||| |||| || | || |||||| | || ||| | | || || || | |||||
Sbjct 10416 AAGGTCTT-GAAACAGCAATTTATTTAAATGATCGTTTTAATCTTGATGGAAGAGATCCA 10358
Query 238755 AACGGATACGTAGGTTGTATGTGG 238778
||||| | || || || ||||||
Sbjct 10357 AACGGGTTTGTTGGCTGCATGTGG 10334
Score = 84.2 bits (92), Expect = 5e-11
Identities = 114/158 (72%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 237972 AAAGTGGTATTTATACAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCATCTCAT 238031
|||||| |||||| |||||||| ||||| |||||||| || ||| || ||| ||
Sbjct 11161 AAAGTGCCATTTATTCAAGTTGATGCTCATAATATTGTTCCAATATGGATTGCTTCTGAT 11102
Query 238032 AAACAAGAATACGGTGCTAGAACATTACGTAAGAAAATAAATGGTATGTT---AGATACA 238088
||||| ||||| | || | ||| | ||||| ||||| ||| | | | | ||||
Sbjct 11101 AAACAGGAATATGCAGCACGGACAATTCGTAATAAAATTAATAGCAAGCTCGGAGAT--- 11045
Query 238089 TATCTTACAGAATTTCCTGTAATAACTAAACATCCTTA 238126
||| | || |||||||| | ||| ||||||||||||
Sbjct 11044 TATTTGACTGAATTTCCACCAGTAATTAAACATCCTTA 11007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150960596230316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |