Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3668 138 3e-27 seq8363 129 1e-24 seq5242 91.5 3e-13 >seq3668 Length=32275 Score = 138 bits (152), Expect = 3e-27 Identities = 182/250 (73%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| ||||| ||||| || || ||||| |||||| | || | || || Sbjct 30886 AAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATC 30827 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | |||||| ||||| || |||| | |||||||| || || ||||||||||| || Sbjct 30826 TTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 30767 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || |||||||| || |||||||| | || || ||| || || || | || || || Sbjct 30766 TTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGT 30707 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG-TGTACAGTATTTATTAGAGTAA 104585 |||||||| | |||||| || || || ||||| ||| ||||| || | |||||| Sbjct 30706 TTTACCAGTTAATGTTTTGACGAAGATTTGCATCTTGATGTACCTTAAAAAAATGAGTAA 30647 Query 104586 T-AATTATTT 104594 | |||||||| Sbjct 30646 TAAATTATTT 30637 >seq8363 Length=52898 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| || | ||| || |||||||||||||| ||||| | || | || || ||| Sbjct 26347 ACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCT 26406 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | |||||| || ||||| || | | |||||||| ||||| |||||||||||||| ||| Sbjct 26407 AATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGA 26466 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || |||||||| | || || || || || || || ||||| |||||| Sbjct 26467 ATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTTA 26526 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| || || |||||||| Sbjct 26527 CCCGTCAAGGTTTTGACGAAGATCTGCAT 26555 >seq5242 Length=62730 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 238576 AAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGC 238635 ||||||| ||| |||||||| || || || |||||| || ||||||||||| Sbjct 10536 AAACTCATGATGATTTATGGAATAGTGCACAAATTCAAATGACAAAGGAAGGCAAAATGC 10477 Query 238636 ATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGG 238695 | | || || |||||||||||||| |||||||| | |||||||| ||| ||| | | Sbjct 10476 ACGGATTTTTGCGAATGTATTGGGCAAAAAAGATTTTAGAATGGACGGCATCGCCAGAAG 10417 Query 238696 AAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCT 238754 ||| |||| || | || |||||| | || ||| | | || || || | ||||| Sbjct 10416 AAGGTCTT-GAAACAGCAATTTATTTAAATGATCGTTTTAATCTTGATGGAAGAGATCCA 10358 Query 238755 AACGGATACGTAGGTTGTATGTGG 238778 ||||| | || || || |||||| Sbjct 10357 AACGGGTTTGTTGGCTGCATGTGG 10334 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/158 (72%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 237972 AAAGTGGTATTTATACAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCATCTCAT 238031 |||||| |||||| |||||||| ||||| |||||||| || ||| || ||| || Sbjct 11161 AAAGTGCCATTTATTCAAGTTGATGCTCATAATATTGTTCCAATATGGATTGCTTCTGAT 11102 Query 238032 AAACAAGAATACGGTGCTAGAACATTACGTAAGAAAATAAATGGTATGTT---AGATACA 238088 ||||| ||||| | || | ||| | ||||| ||||| ||| | | | | |||| Sbjct 11101 AAACAGGAATATGCAGCACGGACAATTCGTAATAAAATTAATAGCAAGCTCGGAGAT--- 11045 Query 238089 TATCTTACAGAATTTCCTGTAATAACTAAACATCCTTA 238126 ||| | || |||||||| | ||| |||||||||||| Sbjct 11044 TATTTGACTGAATTTCCACCAGTAATTAAACATCCTTA 11007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150960596230316