Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq22402 80.6 7e-11 >seq22402 Length=4759 Score = 80.6 bits (88), Expect = 7e-11 Identities = 127/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 21624 TCCTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCA 21683 ||||| || |||||| |||||||| | || || || |||||||| ||||||| Sbjct 203 TCCTGCCCCGCTTGATCTTGCCATTTACGCGTTCGTAAGCGACCTTCAAGGTAAACCTTG 144 Query 21684 GAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGG 21743 | || || ||||| || || | |||||||||||| | | | | || || || Sbjct 143 GCACCCTTACGCAGGTACTCTCCGGCAATTTCTGCTAAACGTCGGTAGAGCACGACACGA 84 Query 21744 TGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTA 21803 |||||||||||| |||||| || || |||| ||||||||||| |||||| || Sbjct 83 TGCCACTCCGTCAACTCCTTCTGTTCGCCAGAGGCTTTATCACGCCAACTTTCTGAGGTG 24 Query 21804 GC 21805 || Sbjct 23 GC 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124772013047370