Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq6010 152 3e-32
seq11528 89.7 3e-13
>seq6010
Length=9096
Score = 152 bits (168), Expect = 3e-32
Identities = 527/817 (65%), Gaps = 20/817 (2%)
Strand=Plus/Plus
Query 71659 ATGAAATAGCCGAAGCTGGATATGCGCAGGATGGCAGGGGCAGCAATGAATTGCTGGATA 71718
|||| || ||||| || | |||| || | | ||| | ||| || ||||||||
Sbjct 3891 ATGAGATTGCCGATGCGGTCTATGAGCCGCAAGGCCGCCACAGTGGCGAGCTGCTGGATT 3950
Query 71719 TGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAA-----AACGACAAAAGAGCGGTAGTGG 71773
| |||||| ||| || ||| | || || |||| | || |||| |||| | ||
Sbjct 3951 TTGCCGAGTCCCGAGTGTTTCAGATCGCAGAAACGCGGAGCGGCAAA-GAGCAG----GG 4005
Query 71774 TCCAAAAGATATCGCCAGCATTCTCGATGCAACGGTATCTCGCATAGAAGAGTTGTTTCA 71833
|| || |||| | ||||| || | ||| || | ||||| ||| || | | |||
Sbjct 4006 ACCGCAAACTATCAATAAAATTCTTGAAGAGACGCTAACACGCATCGAAAAGCTCTATCA 4065
Query 71834 GCGACCACATGATGGTGTAACGGGGCTTGATACGGGATTTACCGATCTCAATAAGAAGAC 71893
|| || |||| | | || || ||||| ||||| ||| | |||| || ||
Sbjct 4066 CAATCCCCAGAATGGGCTGATAGGCCTCTCCACGGGTTTTACTGATTTAGATAAAAAAAC 4125
Query 71894 GGCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGAC 71953
||||| | ||| || ||||||||||||||||| ||| | || || |||||||| ||
Sbjct 4126 CGCAGGATTACAGAACTCTGATCTCATCATTGTCGCTGCCAGGCCCTCCATGGGGAAAAC 4185
Query 71954 CACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGT-TCGTAACGATAAGCCCGTATTGG 72012
||| ||||| | || | | | | | || | ||| || || || || ||
Sbjct 4186 CACCTTTGCTCTCAACATGTGCCAGCAGGTGGCCATGTCGCAATCCAAA-CCGGTCCTGA 4244
Query 72013 TTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCG----CTCACTGGCTTCTCTT 72068
|||||||| | |||||||| | || |||||||||| ||| || | ||||
Sbjct 4245 TTTTTAGCTTAGAGATGCCCGCTGATCAATTGATGATGCGGATGCTCTCTACCCTCTCCA 4304
Query 72069 GCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGG 72128
| | ||||||| || || |||||||| || ||||| | || || |||||||||||
Sbjct 4305 GTA----TTGATCAAACACGCATTCGGACGGGTCAACTGGATGATGAAGATTGGGCGCGA 4360
Query 72129 GTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGC 72188
| | | |||||| | || |||| || || | | ||||||||| ||| |
Sbjct 4361 ATCACCAGTAGCATGGGTTTATTGATGGAGAAATGTAACCTCTATATTGATGATTCAGCC 4420
Query 72189 GCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGT 72248
| || || || || || ||| | || || || || | | | ||| | || ||
Sbjct 4421 AGTTTAACCCCCACTGATCTCCGTGCTCGAGCGCGGCGACTGTTTCGAGAGCAGGGGGGA 4480
Query 72249 TTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAAC 72308
|| || |||| ||| | ||||| | || | ||||| | || | || | || ||
Sbjct 4481 TTAAGTCTGATCATGGTTGACTATTTACAGTTGATGCGTGCGCCAGGGCAGTCTGAAAAT 4540
Query 72309 CGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAA 72368
|| || | || ||||| || ||||| || || ||||| || || || ||||| |||||
Sbjct 4541 CGTACCCAAGAGATTGCTGAAATTTCACGATCCCTGAAAGCCTTAGCTAAGGAGTTACAG 4600
Query 72369 GTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGA 72428
|| |||||| | || || || || | || || || || ||||| | || || ||
Sbjct 4601 GTCCCGGTGATCGCTTTATCCCAGTTAAACCGGAGTCTAGAGCAGCGATCAGAAAAGCGG 4660
Query 72429 CCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTG 72465
||| | || || ||||| || || || || | ||||
Sbjct 4661 CCGCTGAACTCGGATTTGCGGGAGTCTGGCTCGATTG 4697
Score = 84.2 bits (92), Expect = 1e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 72477 GACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGC 72536
||| |||| | ||| | || || || || || ||||| | | || | |||||||
Sbjct 4859 GACTTGATCCTATTTATCTACCGGGATGAGGTCTATCATGAGAACAGTCAGCTGAAGGGA 4918
Query 72537 ATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCT 72596
||||| || | || || || || || || || |||||||||||||| || | | |
Sbjct 4919 ATTGCAGAAATCATCATTGGCAAACAGCGTAACGGCCCAATTGGCACCGTACGCCTCACC 4978
Query 72597 TTTAACGGCCAATACTCACGGTTTGATAACTATGCCGGTGC 72637
||| | ||||| ||||| |||||||| |||||||| |||||
Sbjct 4979 TTTCAGGGCCACTACTCGCGGTTTGACAACTATGCGGGTGC 5019
>seq11528
Length=3627
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992
||||| ||||||||||||||||||| | ||||||||||||| |||| || |||||| |
Sbjct 60 GGCCCCTTAGCTCAGTGGTTAGAGCAGACGACTCATAATCGTTTGGTCCCCCGTTCAAAT 119
Query 70993 CCGGTAGGGGCCACCAT 71009
| || ||||||||||||
Sbjct 120 CGGGGAGGGGCCACCAT 136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 303125523334317
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |