Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq6010 152 3e-32 seq11528 89.7 3e-13 >seq6010 Length=9096 Score = 152 bits (168), Expect = 3e-32 Identities = 527/817 (65%), Gaps = 20/817 (2%) Strand=Plus/Plus Query 71659 ATGAAATAGCCGAAGCTGGATATGCGCAGGATGGCAGGGGCAGCAATGAATTGCTGGATA 71718 |||| || ||||| || | |||| || | | ||| | ||| || |||||||| Sbjct 3891 ATGAGATTGCCGATGCGGTCTATGAGCCGCAAGGCCGCCACAGTGGCGAGCTGCTGGATT 3950 Query 71719 TGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAA-----AACGACAAAAGAGCGGTAGTGG 71773 | |||||| ||| || ||| | || || |||| | || |||| |||| | || Sbjct 3951 TTGCCGAGTCCCGAGTGTTTCAGATCGCAGAAACGCGGAGCGGCAAA-GAGCAG----GG 4005 Query 71774 TCCAAAAGATATCGCCAGCATTCTCGATGCAACGGTATCTCGCATAGAAGAGTTGTTTCA 71833 || || |||| | ||||| || | ||| || | ||||| ||| || | | ||| Sbjct 4006 ACCGCAAACTATCAATAAAATTCTTGAAGAGACGCTAACACGCATCGAAAAGCTCTATCA 4065 Query 71834 GCGACCACATGATGGTGTAACGGGGCTTGATACGGGATTTACCGATCTCAATAAGAAGAC 71893 || || |||| | | || || ||||| ||||| ||| | |||| || || Sbjct 4066 CAATCCCCAGAATGGGCTGATAGGCCTCTCCACGGGTTTTACTGATTTAGATAAAAAAAC 4125 Query 71894 GGCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGAC 71953 ||||| | ||| || ||||||||||||||||| ||| | || || |||||||| || Sbjct 4126 CGCAGGATTACAGAACTCTGATCTCATCATTGTCGCTGCCAGGCCCTCCATGGGGAAAAC 4185 Query 71954 CACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGT-TCGTAACGATAAGCCCGTATTGG 72012 ||| ||||| | || | | | | | || | ||| || || || || || Sbjct 4186 CACCTTTGCTCTCAACATGTGCCAGCAGGTGGCCATGTCGCAATCCAAA-CCGGTCCTGA 4244 Query 72013 TTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCG----CTCACTGGCTTCTCTT 72068 |||||||| | |||||||| | || |||||||||| ||| || | |||| Sbjct 4245 TTTTTAGCTTAGAGATGCCCGCTGATCAATTGATGATGCGGATGCTCTCTACCCTCTCCA 4304 Query 72069 GCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGG 72128 | | ||||||| || || |||||||| || ||||| | || || ||||||||||| Sbjct 4305 GTA----TTGATCAAACACGCATTCGGACGGGTCAACTGGATGATGAAGATTGGGCGCGA 4360 Query 72129 GTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGC 72188 | | | |||||| | || |||| || || | | ||||||||| ||| | Sbjct 4361 ATCACCAGTAGCATGGGTTTATTGATGGAGAAATGTAACCTCTATATTGATGATTCAGCC 4420 Query 72189 GCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGT 72248 | || || || || || ||| | || || || || | | | ||| | || || Sbjct 4421 AGTTTAACCCCCACTGATCTCCGTGCTCGAGCGCGGCGACTGTTTCGAGAGCAGGGGGGA 4480 Query 72249 TTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAAC 72308 || || |||| ||| | ||||| | || | ||||| | || | || | || || Sbjct 4481 TTAAGTCTGATCATGGTTGACTATTTACAGTTGATGCGTGCGCCAGGGCAGTCTGAAAAT 4540 Query 72309 CGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAA 72368 || || | || ||||| || ||||| || || ||||| || || || ||||| ||||| Sbjct 4541 CGTACCCAAGAGATTGCTGAAATTTCACGATCCCTGAAAGCCTTAGCTAAGGAGTTACAG 4600 Query 72369 GTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGA 72428 || |||||| | || || || || | || || || || ||||| | || || || Sbjct 4601 GTCCCGGTGATCGCTTTATCCCAGTTAAACCGGAGTCTAGAGCAGCGATCAGAAAAGCGG 4660 Query 72429 CCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTG 72465 ||| | || || ||||| || || || || | |||| Sbjct 4661 CCGCTGAACTCGGATTTGCGGGAGTCTGGCTCGATTG 4697 Score = 84.2 bits (92), Expect = 1e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 72477 GACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGC 72536 ||| |||| | ||| | || || || || || ||||| | | || | ||||||| Sbjct 4859 GACTTGATCCTATTTATCTACCGGGATGAGGTCTATCATGAGAACAGTCAGCTGAAGGGA 4918 Query 72537 ATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCT 72596 ||||| || | || || || || || || || |||||||||||||| || | | | Sbjct 4919 ATTGCAGAAATCATCATTGGCAAACAGCGTAACGGCCCAATTGGCACCGTACGCCTCACC 4978 Query 72597 TTTAACGGCCAATACTCACGGTTTGATAACTATGCCGGTGC 72637 ||| | ||||| ||||| |||||||| |||||||| ||||| Sbjct 4979 TTTCAGGGCCACTACTCGCGGTTTGACAACTATGCGGGTGC 5019 >seq11528 Length=3627 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992 ||||| ||||||||||||||||||| | ||||||||||||| |||| || |||||| | Sbjct 60 GGCCCCTTAGCTCAGTGGTTAGAGCAGACGACTCATAATCGTTTGGTCCCCCGTTCAAAT 119 Query 70993 CCGGTAGGGGCCACCAT 71009 | || |||||||||||| Sbjct 120 CGGGGAGGGGCCACCAT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303125523334317