Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq3947 158 1e-33
seq2126 134 2e-26
>seq3947
Length=2916
Score = 158 bits (174), Expect = 1e-33
Identities = 393/583 (67%), Gaps = 38/583 (7%)
Strand=Plus/Minus
Query 6841 TAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGA 6900
|||||||||||||| || | ||||||| ||| || || || || | || | | |||
Sbjct 1510 TAAATATGAGCATCACCAAAAGTATGAACAAAATCGCCAGGCTTTAAATTTGTAACATGA 1451
Query 6901 GCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATA 6960
||||| | || || |||| || || || || | ||||||||| || || | ||||||
Sbjct 1450 GCAATCATGTACGTCAATAGAGCGTATGATGCGATATTAAAAGGAACTCCGAGACCCATA 1391
Query 6961 TCTGCTGATCTTTGATAACATTGACAAGATAAAAT----ATTGTCTATAGCATAAAATTG 7016
|| ||||||||||| || |||| ||| | || | ||| | | ||||||| ||
Sbjct 1390 TCAGCTGATCTTTGGTATAATTGGCAAC-TCAACTCGCCATTTGCGA---CATAAAACTG 1335
Query 7017 ACACAATACA-TGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCAAG 7072
|| | ||| |||||||| || || ||| | | ||||| ||||||||| |
Sbjct 1334 T-ACCAGACAATGACATGGTGG---AAGTGCCATTTGTGGAATATCCACTGGATTCCAGG 1279
Query 7073 CAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT--ATAATTATTTG 7130
|| | | | ||| |||| |||||||||||| | ||| | | ||| |||| ||
Sbjct 1278 CACTTAAAATAATTCGTCGATCATTTGGATTAGATTT--AATGCGTTCAATAACATCTTT 1221
Query 7131 TAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAA 7190
||||||||| || || || ||||| | | || || | |||| | || |||||
Sbjct 1220 TAATTGATCAATTCCTTGTTTGTCATATTCATGATCGCATGTCTTATATTGGGCACCAAA 1161
Query 7191 ATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCC 7250
||| | ||||||||| ||||||| ||||| |||||||| ||| ||| | |||||| ||
Sbjct 1160 ATGACGCCATTGAAATCCATAAACTGGACCCAAATCACCCACTTGACGCTCATTAAAACC 1101
Query 7251 TAATCGATTTA--AATT---AGATTTTGATCCATAAGCATCCCAAATATGTACAGAtttt 7305
|| || | |||| | || | | | |||||||| || | ||| |
Sbjct 1100 GGATGCATCGAGGAATTCACGCGTACTGTTTC-----CGTCCCAAATTCGT--ATATTCT 1048
Query 7306 t---ttG-ATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTAC 7361
| ||| | ||||| || || ||| || ||||| | |||||||||||| || || |
Sbjct 1047 TCGCTTGAAGCAATTT--AGCATCTGTGGAACCTTTTATGAACCATAAAAGCTCCTCAGC 990
Query 7362 TATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAAT 7404
| ||| |||||||| | || ||| || || || || || |||
Sbjct 989 GACTCCTCGCCAAAATACTCGTTTGGTTGTCAACAATGGAAAT 947
>seq2126
Length=22511
Score = 134 bits (148), Expect = 2e-26
Identities = 298/442 (67%), Gaps = 20/442 (5%)
Strand=Plus/Plus
Query 164551 GGTAAAACATTAATGGCTCGATGCATTGCT-CAAGCTTTTAAATC---GCGACCCGTTAA 164606
||||| ||||| ||||||||| |||| | ||| | || ||| | || ||| ||
Sbjct 17241 GGTAAGACATTGATGGCTCGACAAATTGGTACAA--TGTTGAATGCAAGAGAACCG--AA 17296
Query 164607 AATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAG 164666
|||||| |||||||| || | ||| |||| ||||| |||||| ||||| ||| || |
Sbjct 17297 AATTGTAAATGGTCCACAAATCTTGGACAAGTATGTTGGTGAGAGCGAAGCAAATATTCG 17356
Query 164667 AAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACA 164726
| | ||| || || ||||||||| |||||| | |||| | || | ||
Sbjct 17357 TAGACTTTTTGCTGATGCAGAAGAAGAAGAAAAGAGATTAGGTCCAAACAGCGGTCTTCA 17416
Query 164727 TGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG------TGATA-ATA 164779
|||| | ||||| || || |||||| |||| ||| || || || | | |
Sbjct 17417 CATTATCATATTTGACGAAATCGATGCTATTTGTAAATCTCGAGGCTCAGTTGCTGGAAA 17476
Query 164780 TTA-----TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATC 164834
|| | || ||| | || || ||||| || | | || || || ||||| ||
Sbjct 17477 TTCAGGCGTCCACGATACGGTTGTGAATCAATTATTAGCCAAGATCGACGGTGTTGAGCA 17536
Query 164835 CTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTT 164894
|||||||| ||||| || | |||||||| || |||| ||| | ||||||||||||||
Sbjct 17537 ATTAAATAACATTTTGGTTATTGGTATGACAAATCGACGTGACATGATTGATGATGCTTT 17596
Query 164895 ATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACG 164954
| | |||||||| ||||||| | |||| ||||| || || || | || |||||
Sbjct 17597 AATGAGACCTGGTAGATTAGAGGTTCAAATGGAAATTGGCTTGCCTAATGAACCTGGACG 17656
Query 164955 CCTTCAAATTTTAAAAGTTCAT 164976
| |||||||| || |||||
Sbjct 17657 AGTACAAATTTTGAATATTCAT 17678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595650953833200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |