Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq3947 158 1e-33 seq2126 134 2e-26 >seq3947 Length=2916 Score = 158 bits (174), Expect = 1e-33 Identities = 393/583 (67%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 6841 TAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGA 6900 |||||||||||||| || | ||||||| ||| || || || || | || | | ||| Sbjct 1510 TAAATATGAGCATCACCAAAAGTATGAACAAAATCGCCAGGCTTTAAATTTGTAACATGA 1451 Query 6901 GCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATA 6960 ||||| | || || |||| || || || || | ||||||||| || || | |||||| Sbjct 1450 GCAATCATGTACGTCAATAGAGCGTATGATGCGATATTAAAAGGAACTCCGAGACCCATA 1391 Query 6961 TCTGCTGATCTTTGATAACATTGACAAGATAAAAT----ATTGTCTATAGCATAAAATTG 7016 || ||||||||||| || |||| ||| | || | ||| | | ||||||| || Sbjct 1390 TCAGCTGATCTTTGGTATAATTGGCAAC-TCAACTCGCCATTTGCGA---CATAAAACTG 1335 Query 7017 ACACAATACA-TGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCAAG 7072 || | ||| |||||||| || || ||| | | ||||| ||||||||| | Sbjct 1334 T-ACCAGACAATGACATGGTGG---AAGTGCCATTTGTGGAATATCCACTGGATTCCAGG 1279 Query 7073 CAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT--ATAATTATTTG 7130 || | | | ||| |||| |||||||||||| | ||| | | ||| |||| || Sbjct 1278 CACTTAAAATAATTCGTCGATCATTTGGATTAGATTT--AATGCGTTCAATAACATCTTT 1221 Query 7131 TAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAA 7190 ||||||||| || || || ||||| | | || || | |||| | || ||||| Sbjct 1220 TAATTGATCAATTCCTTGTTTGTCATATTCATGATCGCATGTCTTATATTGGGCACCAAA 1161 Query 7191 ATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCC 7250 ||| | ||||||||| ||||||| ||||| |||||||| ||| ||| | |||||| || Sbjct 1160 ATGACGCCATTGAAATCCATAAACTGGACCCAAATCACCCACTTGACGCTCATTAAAACC 1101 Query 7251 TAATCGATTTA--AATT---AGATTTTGATCCATAAGCATCCCAAATATGTACAGAtttt 7305 || || | |||| | || | | | |||||||| || | ||| | Sbjct 1100 GGATGCATCGAGGAATTCACGCGTACTGTTTC-----CGTCCCAAATTCGT--ATATTCT 1048 Query 7306 t---ttG-ATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTAC 7361 | ||| | ||||| || || ||| || ||||| | |||||||||||| || || | Sbjct 1047 TCGCTTGAAGCAATTT--AGCATCTGTGGAACCTTTTATGAACCATAAAAGCTCCTCAGC 990 Query 7362 TATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAAT 7404 | ||| |||||||| | || ||| || || || || || ||| Sbjct 989 GACTCCTCGCCAAAATACTCGTTTGGTTGTCAACAATGGAAAT 947 >seq2126 Length=22511 Score = 134 bits (148), Expect = 2e-26 Identities = 298/442 (67%), Gaps = 20/442 (5%) Strand=Plus/Plus Query 164551 GGTAAAACATTAATGGCTCGATGCATTGCT-CAAGCTTTTAAATC---GCGACCCGTTAA 164606 ||||| ||||| ||||||||| |||| | ||| | || ||| | || ||| || Sbjct 17241 GGTAAGACATTGATGGCTCGACAAATTGGTACAA--TGTTGAATGCAAGAGAACCG--AA 17296 Query 164607 AATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAG 164666 |||||| |||||||| || | ||| |||| ||||| |||||| ||||| ||| || | Sbjct 17297 AATTGTAAATGGTCCACAAATCTTGGACAAGTATGTTGGTGAGAGCGAAGCAAATATTCG 17356 Query 164667 AAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACA 164726 | | ||| || || ||||||||| |||||| | |||| | || | || Sbjct 17357 TAGACTTTTTGCTGATGCAGAAGAAGAAGAAAAGAGATTAGGTCCAAACAGCGGTCTTCA 17416 Query 164727 TGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG------TGATA-ATA 164779 |||| | ||||| || || |||||| |||| ||| || || || | | | Sbjct 17417 CATTATCATATTTGACGAAATCGATGCTATTTGTAAATCTCGAGGCTCAGTTGCTGGAAA 17476 Query 164780 TTA-----TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATC 164834 || | || ||| | || || ||||| || | | || || || ||||| || Sbjct 17477 TTCAGGCGTCCACGATACGGTTGTGAATCAATTATTAGCCAAGATCGACGGTGTTGAGCA 17536 Query 164835 CTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTT 164894 |||||||| ||||| || | |||||||| || |||| ||| | |||||||||||||| Sbjct 17537 ATTAAATAACATTTTGGTTATTGGTATGACAAATCGACGTGACATGATTGATGATGCTTT 17596 Query 164895 ATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACG 164954 | | |||||||| ||||||| | |||| ||||| || || || | || ||||| Sbjct 17597 AATGAGACCTGGTAGATTAGAGGTTCAAATGGAAATTGGCTTGCCTAATGAACCTGGACG 17656 Query 164955 CCTTCAAATTTTAAAAGTTCAT 164976 | |||||||| || ||||| Sbjct 17657 AGTACAAATTTTGAATATTCAT 17678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595650953833200