Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq25174 152 3e-32 seq25852 114 7e-21 >seq25174 Length=40909 Score = 152 bits (168), Expect = 3e-32 Identities = 358/533 (67%), Gaps = 17/533 (3%) Strand=Plus/Minus Query 3618 ATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGT 3677 |||| || ||||||||||||| || || || ||||| |||||||| |||||||| || | Sbjct 32132 ATGATTTATTATATTTTGCTGATGTCTGTGCCGGTCCCGGTGGTTTTAGTGAATACATTT 32073 Query 3678 TATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaa----aaaaT 3733 | | | || |||||| | ||||| | ||| | || ||| ||| ||||| Sbjct 32072 TGTATCGTAAAAAATGGGAAGCTAAAGGATTTGGATTTACATTA----AAATCTGAAAAT 32017 Query 3734 GATTTTCAACTGAACAGATTTTACGATAACTTTTCGGAAACTTTACACCCGTATTATGGT 3793 |||||| ||||| | |||| | | | || ||||| |||| |||||| Sbjct 32016 GATTTTAAACTGCATGACTTTTTTGTTGGACCGCCAGAGACTTTCTCTCCGTTTTATGGC 31957 Query 3794 CCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATGATT 3853 | | ||||| ||| | ||| || | ||||| ||| ||| ||| | ||| Sbjct 31956 ATCAATGATGATGGAAATGTTTACGATCCTGAAAATATTAAATCATTTGAAGAACTTATT 31897 Query 3854 ATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTT 3913 | | | | || ||| | || || ||||||||||||||||| ||||| ||||| ||| Sbjct 31896 AAGGATCAAACAGAATCA---GGAGTGCATTTTATGATGGCTGATGGTGGTTTCTCCGTT 31840 Query 3914 GAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTA 3973 || || ||||| ||||| |||||||| | ||||| | | ||| | || ||| | Sbjct 31839 GAAGGACAAGAGAATATTCAAGAAATCCTTTCGAAGCAACTTTATCTTGCACAGTGTCTT 31780 Query 3974 ATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTT 4033 |||||| | ||| | |||| || |||| |||| | ||| | || ||| | || Sbjct 31779 TGTGCATTAACGATTGTGCGAACGAAAGGACATTTTGTTGTAAAAGTATTTGATCTCTTC 31720 Query 4034 ACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGAT-CTTTTAATCGTATTTGTAT 4092 || || || |||| ||| | ||||| ||||||| || ||| | | | ||| |||| Sbjct 31719 ACGCCATTCAGTGTCTCATTAATTTATTTAATGTATAAATGCTTCTCAAAG-ATTAGTAT 31661 Query 4093 TTTCAAACC--ACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGTG 4143 || || || ||| | | | ||||| || ||||||||||||||||| || || Sbjct 31660 TTGTAAGCCCAACACT-AGC-CGACCTGCTAATTCTGAAAGATATTTAGTTTG 31610 >seq25852 Length=9575 Score = 114 bits (126), Expect = 7e-21 Identities = 351/538 (65%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 3610 TGGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGA 3669 |||| | |||| ||| | || |||||||| || || |||||||| ||||| || ||||| Sbjct 2436 TGGAAAAGATGACTTGCTGTACTTTGCTGATGTCTGTGCTGGTCCTGGTGGGTTTAGTGA 2495 Query 3670 ATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaa 3729 |||| | | | ||||| ||| | ||||| | ||| | || ||| | | Sbjct 2496 ATATGTCCTCAATCGTAAGAAGTGGGAAGCTAAAGGATTTGGATTTACCTTAAAAGCTGA 2555 Query 3730 aaaTGATTTTCAACTGAACAGATTTTACGATAACTTTTCGGAAAC-TTTACACCCGTATT 3788 |||||| ||| |||| | || | | | | | ||||| ||||| || | | Sbjct 2556 AAATGACTTTAAACTTCATGACTTCTTTGCTGGTCCTCCAGAAACATTTACTCCATTCT- 2614 Query 3789 ATGGTCCGCTTAACG---ATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTG 3845 |||| |||| | |||| ||| ||||| || || |||||| ||| |||| | Sbjct 2615 ATGGAA---TTAATGGAGATGGAAATGTCTACGATCCAGAAAATCTAAAATCTTTTGAGG 2671 Query 3846 AAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGT 3905 | | || ||| | | || || || || ||||||||||||||||||||||| | Sbjct 2672 ATCTCATCATGGACCAAACAGACTCT---GGAGTGCATTTTATGATGGCTGACGGTGGCT 2728 Query 3906 TCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTC 3965 |||| ||||| || ||||| ||||| |||||||| | || || || | ||| | | Sbjct 2729 TCTCTGTTGAAGGACAAGAGAATATACAAGAAATTCTTTCTAAGCAGCTTTATCTTGCAC 2788 Query 3966 AATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCG 4025 | || | ||||||| || || | | ||| |||| || |||| || |||| Sbjct 2789 AGTGCCTTTGTGCATTGTCAATTGTAAGGACCAATGGACATTTCGTGGTCAAGTTGTTCG 2848 Query 4026 ATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTA 4085 | | || ||||| ||||||| | | || || ||||||| || |||| | Sbjct 2849 ACCTCTTCACACCATTTAGTGTATCCCTGATTTACTTAATGTATAAATGCTTTACAAAAA 2908 Query 4086 TTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGTG 4143 | | |||| ||| || | | ||||| || |||||||||||||| |||||||| Sbjct 2909 TCAGCATTTGCAAGCCCAACACGAGTCGACCTGCTAATTCTGAAAGATACTTGGTGTG 2966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276453573760531