Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq18757 95.1 6e-15 seq2881 95.1 6e-15 seq19836 89.7 3e-13 seq12333 89.7 3e-13 seq1045 89.7 3e-13 >seq18757 Length=27658 Score = 95.1 bits (104), Expect = 6e-15 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | |||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 18321 AAAAAAAAAGATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 18380 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||| ||||| Sbjct 18381 GCTCTAACCAGCTGAGCTATGGGGCC 18406 >seq2881 Length=7427 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| || |||| | || |||||||||| ||||||||||||||||||||| Sbjct 2339 AATCAAAAAAGAAGATGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCAC 2280 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||| ||||| Sbjct 2279 GACGCTCTAACCAACTGAGCTATGGGGCC 2251 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| |||| | || |||||||||| ||||||||||||||||||||||| Sbjct 2429 AAAAAAGAAAAGATGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGA 2488 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||| ||||| Sbjct 2489 CGCTCTAACCAACTGAGCTATGGGGCC 2515 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11467 AGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGG 11526 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 2608 AGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTATGGG 2667 Query 11527 GCC 11529 ||| Sbjct 2668 GCC 2670 >seq19836 Length=1272 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| | ||| || |||||||||| ||||||||||||||||||||||||| Sbjct 244 AAAAAAGAAATGGCTCCA-GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 302 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||| ||||| Sbjct 303 CTCTAACCAGCTGAGCTATGGGGCC 327 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| | ||| || |||||||||| ||||||||||||||||||||||||| Sbjct 409 AAAAAAGAAATGGCTCCA-GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 467 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||| ||||| Sbjct 468 CTCTAACCAGCTGAGCTATGGGGCC 492 >seq12333 Length=1760 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| | ||| || |||||||||| ||||||||||||||||||||||||| Sbjct 690 AAAAAAGAAATGGCTCCA-GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 748 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||| ||||| Sbjct 749 CTCTAACCAGCTGAGCTATGGGGCC 773 >seq1045 Length=4455 Score = 89.7 bits (98), Expect = 3e-13 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| | | |||||| ||||| | ||||| | || |||||||||| ||||||||| Sbjct 1483 AAAAAGAAAATTAAGCAAAAAAAAGTTTGGCTCCAGAGAGGATCGAACTCACGACCTTCG 1542 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||| |||| |||||||| ||||| Sbjct 1543 CGTTATTAGCACGATGCTCTAACCAGCTGAGCTATGGGGCC 1583 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261396621656452