Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq18757 95.1 6e-15
seq2881 95.1 6e-15
seq19836 89.7 3e-13
seq12333 89.7 3e-13
seq1045 89.7 3e-13
>seq18757
Length=27658
Score = 95.1 bits (104), Expect = 6e-15
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| | |||||| | || |||||||||| ||||||||||||||||||||||||
Sbjct 18321 AAAAAAAAAGATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 18380
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||| |||||
Sbjct 18381 GCTCTAACCAGCTGAGCTATGGGGCC 18406
>seq2881
Length=7427
Score = 95.1 bits (104), Expect = 6e-15
Identities = 74/89 (83%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||| ||||| || |||| | || |||||||||| |||||||||||||||||||||
Sbjct 2339 AATCAAAAAAGAAGATGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCAC 2280
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||| |||||
Sbjct 2279 GACGCTCTAACCAACTGAGCTATGGGGCC 2251
Score = 93.3 bits (102), Expect = 2e-14
Identities = 73/87 (84%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||||| ||| |||| | || |||||||||| |||||||||||||||||||||||
Sbjct 2429 AAAAAAGAAAAGATGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGA 2488
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||||||||| |||||
Sbjct 2489 CGCTCTAACCAACTGAGCTATGGGGCC 2515
Score = 89.7 bits (98), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 11467 AGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGG 11526
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 2608 AGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTATGGG 2667
Query 11527 GCC 11529
|||
Sbjct 2668 GCC 2670
>seq19836
Length=1272
Score = 89.7 bits (98), Expect = 3e-13
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| |||| | ||| || |||||||||| |||||||||||||||||||||||||
Sbjct 244 AAAAAAGAAATGGCTCCA-GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 302
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||| |||||||| |||||
Sbjct 303 CTCTAACCAGCTGAGCTATGGGGCC 327
Score = 89.7 bits (98), Expect = 3e-13
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| |||| | ||| || |||||||||| |||||||||||||||||||||||||
Sbjct 409 AAAAAAGAAATGGCTCCA-GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 467
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||| |||||||| |||||
Sbjct 468 CTCTAACCAGCTGAGCTATGGGGCC 492
>seq12333
Length=1760
Score = 89.7 bits (98), Expect = 3e-13
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| |||| | ||| || |||||||||| |||||||||||||||||||||||||
Sbjct 690 AAAAAAGAAATGGCTCCA-GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 748
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||| |||||||| |||||
Sbjct 749 CTCTAACCAGCTGAGCTATGGGGCC 773
>seq1045
Length=4455
Score = 89.7 bits (98), Expect = 3e-13
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
||| | | |||||| ||||| | ||||| | || |||||||||| |||||||||
Sbjct 1483 AAAAAGAAAATTAAGCAAAAAAAAGTTTGGCTCCAGAGAGGATCGAACTCACGACCTTCG 1542
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| ||||| |||| |||||||| |||||
Sbjct 1543 CGTTATTAGCACGATGCTCTAACCAGCTGAGCTATGGGGCC 1583
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261396621656452
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |