Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3668 129 5e-25 seq8363 114 1e-20 >seq3668 Length=32275 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || ||||||||||| | || || || |||| || ||| ||| Sbjct 30882 ACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCC 30823 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || | |||||||| | ||| |||||||| ||||| ||||||||||| | Sbjct 30822 AATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGG 30763 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||||||||| ||| |||||||| | || || || | ||||||||||| Sbjct 30762 ATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTTA 30703 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||||| || ||||| ||||| Sbjct 30702 CCAGTTAATGTTTTGACGAAGATTTGCAT 30674 >seq8363 Length=52898 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||| ||||| | || || || || || | || || ||||||| ||| | Sbjct 26341 CGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCA 26400 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| | ||||| ||| ||||||| |||| ||| |||||||||||||| |||||||| Sbjct 26401 TCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTA 26460 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||||| || | | ||||| | | ||||| || | || || Sbjct 26461 TCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATT 26520 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || | ||||| || |||||||||||| Sbjct 26521 GTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATG 26556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448124900775720