Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq22487 194 3e-45 seq15714 138 2e-28 >seq22487 Length=16700 Score = 194 bits (214), Expect = 3e-45 Identities = 203/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | |||||| |||||||||||||||||||| || |||||||| Sbjct 2932 GCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAACCAGCTATT 2991 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| ||||||||| |||| || ||| |||| ||||| | | Sbjct 2992 CGTCGTTTAGCTCGTCGTGGTGGTGTCAAGCGTATCTCAGGCTTGATCTACGAAGAAACT 3051 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||| | | | || || | ||||||| || ||||| || Sbjct 3052 CGTGGAGTCTTGAAAGTTTTCTTGGAAAATGTCATTCGTGATGCTGTCACTTATACTGAA 3111 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||| | ||||| ||||| | |||||| | || ||||| ||||| | ||||| Sbjct 3112 CATGCTAAGAGGAAGACAGTCACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 3171 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | ||||||| ||||| ||||| Sbjct 3172 AGAACTCTTTATGGATTTGGCGGTTAA 3198 >seq15714 Length=3068 Score = 138 bits (152), Expect = 2e-28 Identities = 193/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||| | ||||| | ||| || |||||||| |||||||| || ||||| || || Sbjct 1657 GCTAAGAGACATCGTAAGGTTCTACGTGATAACATTCAAGGAATAACAAAGCCTGCAATT 1598 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| | || | ||||||||||| || ||| | || ||||| | ||||| || | Sbjct 1597 CGTCGATTAGCAAGACGTGGTGGAGTTAAACGTATATCAGGATTAATTTATGAGGAAGTA 1538 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || || |||||||| | | | || || | |||| || | |||||||| Sbjct 1537 CGTGGAGTATTAAAGATCTTTTTGGAAAATGTCATTCGTGATTCTGTGACTTATACCGAA 1478 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||||||| ||||| || || | ||||| | || |||||| | ||||| ||||| Sbjct 1477 CATGCTAAACGAAAGACAGTAACAGCTATGGACGTAGTTTATGCACTTAAACGACAAGGA 1418 Query 16673 CGTAAGATT-TATGGTTTTGGAAGTTAA 16699 || || ||| ||||| ||||| ||||| Sbjct 1417 CG-AACATTGTATGGATTTGGTGGTTAA 1391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79048066111161