Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq22487 194 3e-45
seq15714 138 2e-28
>seq22487
Length=16700
Score = 194 bits (214), Expect = 3e-45
Identities = 203/267 (76%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | |||||| |||||||||||||||||||| || ||||||||
Sbjct 2932 GCAAAGCGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAACCAGCTATT 2991
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| | |||||||||||||| ||||||||| |||| || ||| |||| ||||| | |
Sbjct 2992 CGTCGTTTAGCTCGTCGTGGTGGTGTCAAGCGTATCTCAGGCTTGATCTACGAAGAAACT 3051
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || ||||| | ||| | | | || || | ||||||| || ||||| ||
Sbjct 3052 CGTGGAGTCTTGAAAGTTTTCTTGGAAAATGTCATTCGTGATGCTGTCACTTATACTGAA 3111
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||||| | ||||| ||||| | |||||| | || ||||| ||||| | |||||
Sbjct 3112 CATGCTAAGAGGAAGACAGTCACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 3171
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | ||||||| ||||| |||||
Sbjct 3172 AGAACTCTTTATGGATTTGGCGGTTAA 3198
>seq15714
Length=3068
Score = 138 bits (152), Expect = 2e-28
Identities = 193/268 (72%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||| | ||||| | ||| || |||||||| |||||||| || ||||| || ||
Sbjct 1657 GCTAAGAGACATCGTAAGGTTCTACGTGATAACATTCAAGGAATAACAAAGCCTGCAATT 1598
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| | || | ||||||||||| || ||| | || ||||| | ||||| || |
Sbjct 1597 CGTCGATTAGCAAGACGTGGTGGAGTTAAACGTATATCAGGATTAATTTATGAGGAAGTA 1538
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || || |||||||| | | | || || | |||| || | ||||||||
Sbjct 1537 CGTGGAGTATTAAAGATCTTTTTGGAAAATGTCATTCGTGATTCTGTGACTTATACCGAA 1478
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| |||||||| ||||| || || | ||||| | || |||||| | ||||| |||||
Sbjct 1477 CATGCTAAACGAAAGACAGTAACAGCTATGGACGTAGTTTATGCACTTAAACGACAAGGA 1418
Query 16673 CGTAAGATT-TATGGTTTTGGAAGTTAA 16699
|| || ||| ||||| ||||| |||||
Sbjct 1417 CG-AACATTGTATGGATTTGGTGGTTAA 1391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79048066111161
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |