Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq8700 232 1e-55 >seq8700 Length=5779 Score = 232 bits (256), Expect = 1e-55 Identities = 503/742 (68%), Gaps = 43/742 (6%) Strand=Plus/Minus Query 193461 CAGGATGGATCTTATCTTGCCGAGTTTCTTTTGTCTAAG-GGATATGAAGTTCATGGTAT 193519 ||||||||||| |||||||| || || ||| ||||| || |||||||||||||| || Sbjct 1142 CAGGATGGATCATATCTTGCTGAATT-CTTACTTCTAAAAGGCTATGAAGTTCATGGAAT 1084 Query 193520 TGTAAGGAGAAGTTCCCTAATCAATACTCATAGAATTGATCATATCTATGA--------- 193570 |||||||||||||| ||||||| || ||||| || ||| | ||| | Sbjct 1083 CATAAGGAGAAGTTCCAGTTTCAATACACACAGAATAGAACATTTATATCAAAATCCATA 1024 Query 193571 ----------GAAGAT-CA--CT-----CTTCATTATGGAGATCTAACTGATCCTGTAAA 193612 |||| | || || ||||||||||| ||| | ||||| | | | Sbjct 1023 TTCACATACAGAAGGTGCATCCTTTAAACTTCATTATGGTGATATGACTGA--CAGCTCA 966 Query 193613 TGTTATGGGTGTCATTAGGGC---AGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCA 193669 || | | | | |||| | ||| | || | || || |||||||||| ||| || Sbjct 965 TGCT-TAGTTAAGATTATTGTTCAAGTAAAGCCAACGGAAATTTATAATCTTGCTGCACA 907 Query 193670 AAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGG 193729 | |||||| ||| | || ||||| | || ||||| || | || || | | |||| Sbjct 906 ATCTCATGTCAAAATCTCATTTGACTTAAGTGAATATACAGCTGAAGTGGACGGTGTAGG 847 Query 193730 AACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTA 193789 |||| | | || | || || || | | | ||| | || || | ||| | |||| Sbjct 846 AACTTTACGTTTATTGGATGCTATTAGAACTTGTGGATTAGATCAACAAGTTAGATTCTA 787 Query 193790 TCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCAC 193849 ||| ||||| || ||| ||||||| ||| | | ||||| | | | |||| || Sbjct 786 TCAAGCATCAACATCAGAATTGTATGGAAAAGTTGTGGAAACTCCTCAAACTGAAAAGAC 727 Query 193850 ACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAA 193909 ||||||| ||||| | ||| |||| || || || |||||||| || |||||||| | Sbjct 726 ACCATTTTATCCAAGAAGTCCATATGCAGTTGCTAAATTGTATGGCTACTGGATCATTAT 667 Query 193910 GAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATC 193969 ||||| ||||| | || || | | || || ||||||| | || ||||| ||||| Sbjct 666 TAATTACCGTGAAGCCTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAATC 607 Query 193970 TCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGT--TTATCTAAGATC 194027 |||||||||||||||| || || || || || || ||| || | | |||| || Sbjct 606 GCCAAGAAGAGGTGAGAATTTCGTGACACGAAAAAT--CACCAGATCAGTCGCTAAAATT 549 Query 194028 TCTGTTGGATTACAGAAG-ATTCTT-TATCTTGGTAATCTTAATGCTAAGAGGGATTGGG 194085 || || || | | ||| |||||| | |||||||||||| || | || | ||||||| Sbjct 548 TC-ATTAAATCA-ACAAGAATTCTTGGAACTTGGTAATCTTGATTCAAAACGTGATTGGG 491 Query 194086 GACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATG 194145 | || || ||||| || || ||||| |||||| | ||||| || |||||| |||| || | Sbjct 490 GTCATGCTAAGGACTACGTAGAAGCTATGTGGATGATGTTACAGCAGGATAAACCAGAAG 431 Query 194146 ATTATGTGATTGCTACAGGTGA 194167 | | ||| ||||||||||| || Sbjct 430 ACTTTGTAATTGCTACAGGAGA 409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807255627304120