Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq8700 232 1e-55
>seq8700
Length=5779
Score = 232 bits (256), Expect = 1e-55
Identities = 503/742 (68%), Gaps = 43/742 (6%)
Strand=Plus/Minus
Query 193461 CAGGATGGATCTTATCTTGCCGAGTTTCTTTTGTCTAAG-GGATATGAAGTTCATGGTAT 193519
||||||||||| |||||||| || || ||| ||||| || |||||||||||||| ||
Sbjct 1142 CAGGATGGATCATATCTTGCTGAATT-CTTACTTCTAAAAGGCTATGAAGTTCATGGAAT 1084
Query 193520 TGTAAGGAGAAGTTCCCTAATCAATACTCATAGAATTGATCATATCTATGA--------- 193570
|||||||||||||| ||||||| || ||||| || ||| | ||| |
Sbjct 1083 CATAAGGAGAAGTTCCAGTTTCAATACACACAGAATAGAACATTTATATCAAAATCCATA 1024
Query 193571 ----------GAAGAT-CA--CT-----CTTCATTATGGAGATCTAACTGATCCTGTAAA 193612
|||| | || || ||||||||||| ||| | ||||| | | |
Sbjct 1023 TTCACATACAGAAGGTGCATCCTTTAAACTTCATTATGGTGATATGACTGA--CAGCTCA 966
Query 193613 TGTTATGGGTGTCATTAGGGC---AGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCA 193669
|| | | | | |||| | ||| | || | || || |||||||||| ||| ||
Sbjct 965 TGCT-TAGTTAAGATTATTGTTCAAGTAAAGCCAACGGAAATTTATAATCTTGCTGCACA 907
Query 193670 AAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGG 193729
| |||||| ||| | || ||||| | || ||||| || | || || | | ||||
Sbjct 906 ATCTCATGTCAAAATCTCATTTGACTTAAGTGAATATACAGCTGAAGTGGACGGTGTAGG 847
Query 193730 AACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTA 193789
|||| | | || | || || || | | | ||| | || || | ||| | ||||
Sbjct 846 AACTTTACGTTTATTGGATGCTATTAGAACTTGTGGATTAGATCAACAAGTTAGATTCTA 787
Query 193790 TCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCAC 193849
||| ||||| || ||| ||||||| ||| | | ||||| | | | |||| ||
Sbjct 786 TCAAGCATCAACATCAGAATTGTATGGAAAAGTTGTGGAAACTCCTCAAACTGAAAAGAC 727
Query 193850 ACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAA 193909
||||||| ||||| | ||| |||| || || || |||||||| || |||||||| |
Sbjct 726 ACCATTTTATCCAAGAAGTCCATATGCAGTTGCTAAATTGTATGGCTACTGGATCATTAT 667
Query 193910 GAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATC 193969
||||| ||||| | || || | | || || ||||||| | || ||||| |||||
Sbjct 666 TAATTACCGTGAAGCCTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAATC 607
Query 193970 TCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGT--TTATCTAAGATC 194027
|||||||||||||||| || || || || || || ||| || | | |||| ||
Sbjct 606 GCCAAGAAGAGGTGAGAATTTCGTGACACGAAAAAT--CACCAGATCAGTCGCTAAAATT 549
Query 194028 TCTGTTGGATTACAGAAG-ATTCTT-TATCTTGGTAATCTTAATGCTAAGAGGGATTGGG 194085
|| || || | | ||| |||||| | |||||||||||| || | || | |||||||
Sbjct 548 TC-ATTAAATCA-ACAAGAATTCTTGGAACTTGGTAATCTTGATTCAAAACGTGATTGGG 491
Query 194086 GACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATG 194145
| || || ||||| || || ||||| |||||| | ||||| || |||||| |||| || |
Sbjct 490 GTCATGCTAAGGACTACGTAGAAGCTATGTGGATGATGTTACAGCAGGATAAACCAGAAG 431
Query 194146 ATTATGTGATTGCTACAGGTGA 194167
| | ||| ||||||||||| ||
Sbjct 430 ACTTTGTAATTGCTACAGGAGA 409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807255627304120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |