Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq22402 93.3 1e-14 >seq22402 Length=4759 Score = 93.3 bits (102), Expect = 1e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 32968 TTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCTTTTCG 33027 ||| || |||||||| | || || || |||||||| ||||||| | || || || Sbjct 192 TTGATCTTGCCATTTACGCGTTCGTAAGCGACCTTCAAGGTAAACCTTGGCACCCTTACG 133 Query 33028 CAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGCCACTCCGT 33087 ||| ||||| | |||||||||||| | | | | ||| ||||| ||||||||||| Sbjct 132 CAGGTACTCTCCGGCAATTTCTGCTAAACGTCGGTAGAGCACGACACGATGCCACTCCGT 73 Query 33088 CTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGC 33138 | |||||| || ||||||| |||||| ||||| |||||| || || Sbjct 72 CAACTCCTTCTGTTCGCCAGAGGCTTTATCACGCCAACTTTCTGAGGTGGC 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149905552504188